These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. Step-by-Step Protocol to Generate Hi-C Contact Maps Using the rfy_hic2 Pipeline. Tanizawa H; Chung CY; Fuse SI; Hayashi T; Weisel P; Noma KI Methods Mol Biol; 2025; 2856():133-155. PubMed ID: 39283450 [TBL] [Abstract][Full Text] [Related]
7. Tibanna: software for scalable execution of portable pipelines on the cloud. Lee S; Johnson J; Vitzthum C; Kırlı K; Alver BH; Park PJ Bioinformatics; 2019 Nov; 35(21):4424-4426. PubMed ID: 31077294 [TBL] [Abstract][Full Text] [Related]
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14. CATCH-UP: A High-Throughput Upstream-Pipeline for Bulk ATAC-Seq and ChIP-Seq Data. Riva SG; Georgiades E; Gur ER; Baxter M; Hughes JR J Vis Exp; 2023 Sep; (199):. PubMed ID: 37811941 [TBL] [Abstract][Full Text] [Related]
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