These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

130 related articles for article (PubMed ID: 39283925)

  • 1. Facilitating pathway and network based analysis of RNA-Seq data with pathlinkR.
    Blimkie TM; An A; Hancock REW
    PLoS Comput Biol; 2024 Sep; 20(9):e1012422. PubMed ID: 39283925
    [TBL] [Abstract][Full Text] [Related]  

  • 2. MultiRNAflow: integrated analysis of temporal RNA-seq data with multiple biological conditions.
    Loubaton R; Champagnat N; Vallois P; Vallat L
    Bioinformatics; 2024 May; 40(5):. PubMed ID: 38810104
    [TBL] [Abstract][Full Text] [Related]  

  • 3. DaMiRseq-an R/Bioconductor package for data mining of RNA-Seq data: normalization, feature selection and classification.
    Chiesa M; Colombo GI; Piacentini L
    Bioinformatics; 2018 Apr; 34(8):1416-1418. PubMed ID: 29236969
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GeneTonic: an R/Bioconductor package for streamlining the interpretation of RNA-seq data.
    Marini F; Ludt A; Linke J; Strauch K
    BMC Bioinformatics; 2021 Dec; 22(1):610. PubMed ID: 34949163
    [TBL] [Abstract][Full Text] [Related]  

  • 5. RNASeqR: An R Package for Automated Two-Group RNA-Seq Analysis Workflow.
    Chao KH; Hsiao YW; Lee YF; Lee CY; Lai LC; Tsai MH; Lu TP; Chuang EY
    IEEE/ACM Trans Comput Biol Bioinform; 2021; 18(5):2023-2031. PubMed ID: 31796413
    [TBL] [Abstract][Full Text] [Related]  

  • 6. scBubbletree: computational approach for visualization of single cell RNA-seq data.
    Kitanovski S; Cao Y; Ttoouli D; Farahpour F; Wang J; Hoffmann D
    BMC Bioinformatics; 2024 Sep; 25(1):302. PubMed ID: 39271980
    [TBL] [Abstract][Full Text] [Related]  

  • 7. RNA-Seq in Nonmodel Organisms.
    Chalifa-Caspi V
    Methods Mol Biol; 2021; 2243():143-167. PubMed ID: 33606257
    [TBL] [Abstract][Full Text] [Related]  

  • 8. iDEP Web Application for RNA-Seq Data Analysis.
    Ge X
    Methods Mol Biol; 2021; 2284():417-443. PubMed ID: 33835455
    [TBL] [Abstract][Full Text] [Related]  

  • 9. mAPKL: R/ Bioconductor package for detecting gene exemplars and revealing their characteristics.
    Sakellariou A; Spyrou G
    BMC Bioinformatics; 2015 Sep; 16(1):291. PubMed ID: 26374744
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SPARTA: Simple Program for Automated reference-based bacterial RNA-seq Transcriptome Analysis.
    Johnson BK; Scholz MB; Teal TK; Abramovitch RB
    BMC Bioinformatics; 2016 Feb; 17():66. PubMed ID: 26847232
    [TBL] [Abstract][Full Text] [Related]  

  • 11. 3t-seq: automatic gene expression analysis of single-copy genes, transposable elements, and tRNAs from RNA-seq data.
    Tabaro F; Boulard M
    Brief Bioinform; 2024 Sep; 25(6):. PubMed ID: 39322626
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data.
    Zhu M; Dahmen JL; Stacey G; Cheng J
    BMC Bioinformatics; 2013 Sep; 14():278. PubMed ID: 24053776
    [TBL] [Abstract][Full Text] [Related]  

  • 13. An RNA-Seq Data Analysis Pipeline.
    Sengupta S; Azad RK
    Methods Mol Biol; 2024; 2812():1-9. PubMed ID: 39068354
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Falco: a quick and flexible single-cell RNA-seq processing framework on the cloud.
    Yang A; Troup M; Lin P; Ho JW
    Bioinformatics; 2017 Mar; 33(5):767-769. PubMed ID: 28025200
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Shiny-Seq: advanced guided transcriptome analysis.
    Sundararajan Z; Knoll R; Hombach P; Becker M; Schultze JL; Ulas T
    BMC Res Notes; 2019 Jul; 12(1):432. PubMed ID: 31319888
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GDCRNATools: an R/Bioconductor package for integrative analysis of lncRNA, miRNA and mRNA data in GDC.
    Li R; Qu H; Wang S; Wei J; Zhang L; Ma R; Lu J; Zhu J; Zhong WD; Jia Z
    Bioinformatics; 2018 Jul; 34(14):2515-2517. PubMed ID: 29509844
    [TBL] [Abstract][Full Text] [Related]  

  • 17. The R implementation of the CRAN package PATHChange, a tool to study genetic pathway alterations in transcriptomic data.
    Fontoura CA; Castellani G; Mombach JC
    Comput Biol Med; 2016 Nov; 78():76-80. PubMed ID: 27665533
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.
    Nueda MJ; Tarazona S; Conesa A
    Bioinformatics; 2014 Sep; 30(18):2598-602. PubMed ID: 24894503
    [TBL] [Abstract][Full Text] [Related]  

  • 19. ToPASeq: an R package for topology-based pathway analysis of microarray and RNA-Seq data.
    Ihnatova I; Budinska E
    BMC Bioinformatics; 2015 Oct; 16():350. PubMed ID: 26514335
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Seqpac: a framework for sRNA-seq analysis in R using sequence-based counts.
    Skog S; Örkenby L; Kugelberg U; Öst A; Nätt D
    Bioinformatics; 2023 Apr; 39(4):. PubMed ID: 36944267
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.