These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

143 related articles for article (PubMed ID: 39388213)

  • 21. OGRE: Overlap Graph-based metagenomic Read clustEring.
    Balvert M; Luo X; Hauptfeld E; Schönhuth A; Dutilh BE
    Bioinformatics; 2021 May; 37(7):905-912. PubMed ID: 32871010
    [TBL] [Abstract][Full Text] [Related]  

  • 22. MetaCache: context-aware classification of metagenomic reads using minhashing.
    Müller A; Hundt C; Hildebrandt A; Hankeln T; Schmidt B
    Bioinformatics; 2017 Dec; 33(23):3740-3748. PubMed ID: 28961782
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Comparison of statistical methods to classify environmental genomic fragments.
    Rosen GL; Essinger SD
    IEEE Trans Nanobioscience; 2010 Dec; 9(4):310-6. PubMed ID: 20876033
    [TBL] [Abstract][Full Text] [Related]  

  • 24. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
    Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
    Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
    [TBL] [Abstract][Full Text] [Related]  

  • 25. DL-TODA: A Deep Learning Tool for Omics Data Analysis.
    Cres CM; Tritt A; Bouchard KE; Zhang Y
    Biomolecules; 2023 Mar; 13(4):. PubMed ID: 37189333
    [TBL] [Abstract][Full Text] [Related]  

  • 26. GRASPx: efficient homolog-search of short peptide metagenome database through simultaneous alignment and assembly.
    Zhong C; Yang Y; Yooseph S
    BMC Bioinformatics; 2016 Aug; 17 Suppl 8(Suppl 8):283. PubMed ID: 27585568
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Characterization and simulation of metagenomic nanopore sequencing data with Meta-NanoSim.
    Yang C; Lo T; Nip KM; Hafezqorani S; Warren RL; Birol I
    Gigascience; 2023 Mar; 12():. PubMed ID: 36939007
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Evaluating metagenomics tools for genome binning with real metagenomic datasets and CAMI datasets.
    Yue Y; Huang H; Qi Z; Dou HM; Liu XY; Han TF; Chen Y; Song XJ; Zhang YH; Tu J
    BMC Bioinformatics; 2020 Jul; 21(1):334. PubMed ID: 32723290
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Comparative analysis of metagenomic classifiers for long-read sequencing datasets.
    Marić J; Križanović K; Riondet S; Nagarajan N; Šikić M
    BMC Bioinformatics; 2024 Jan; 25(1):15. PubMed ID: 38212694
    [TBL] [Abstract][Full Text] [Related]  

  • 30. metaMIC: reference-free misassembly identification and correction of de novo metagenomic assemblies.
    Lai S; Pan S; Sun C; Coelho LP; Chen WH; Zhao XM
    Genome Biol; 2022 Nov; 23(1):242. PubMed ID: 36376928
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Floria: fast and accurate strain haplotyping in metagenomes.
    Shaw J; Gounot JS; Chen H; Nagarajan N; Yu YW
    Bioinformatics; 2024 Jun; 40(Suppl 1):i30-i38. PubMed ID: 38940183
    [TBL] [Abstract][Full Text] [Related]  

  • 32. COGNIZER: A Framework for Functional Annotation of Metagenomic Datasets.
    Bose T; Haque MM; Reddy C; Mande SS
    PLoS One; 2015; 10(11):e0142102. PubMed ID: 26561344
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools.
    Rotimi AM; Pierneef R; Reva ON
    BMC Bioinformatics; 2018 Aug; 19(1):309. PubMed ID: 30165813
    [TBL] [Abstract][Full Text] [Related]  

  • 34. BugSeq: a highly accurate cloud platform for long-read metagenomic analyses.
    Fan J; Huang S; Chorlton SD
    BMC Bioinformatics; 2021 Mar; 22(1):160. PubMed ID: 33765910
    [TBL] [Abstract][Full Text] [Related]  

  • 35. MetaObtainer: A Tool for Obtaining Specified Species from Metagenomic Reads of Next-generation Sequencing.
    Pan W; Chen B; Xu Y
    Interdiscip Sci; 2015 Dec; 7(4):405-13. PubMed ID: 26293485
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Improving the sensitivity of long read overlap detection using grouped short k-mer matches.
    Du N; Chen J; Sun Y
    BMC Genomics; 2019 Apr; 20(Suppl 2):190. PubMed ID: 30967123
    [TBL] [Abstract][Full Text] [Related]  

  • 37. A novel data structure to support ultra-fast taxonomic classification of metagenomic sequences with k-mer signatures.
    Liu X; Yu Y; Liu J; Elliott CF; Qian C; Liu J
    Bioinformatics; 2018 Jan; 34(1):171-178. PubMed ID: 29036588
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Assembling Reads Improves Taxonomic Classification of Species.
    Tran Q; Phan V
    Genes (Basel); 2020 Aug; 11(8):. PubMed ID: 32824429
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Fast and space-efficient taxonomic classification of long reads with hierarchical interleaved XOR filters.
    Ulrich JU; Renard BY
    Genome Res; 2024 Jul; 34(6):914-924. PubMed ID: 38886068
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Classifying short genomic fragments from novel lineages using composition and homology.
    Parks DH; MacDonald NJ; Beiko RG
    BMC Bioinformatics; 2011 Aug; 12():328. PubMed ID: 21827705
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.