These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

237 related articles for article (PubMed ID: 39404012)

  • 1. Quest for Orthologs in the Era of Biodiversity Genomics.
    Langschied F; Bordin N; Cosentino S; Fuentes-Palacios D; Glover N; Hiller M; Hu Y; Huerta-Cepas J; Coelho LP; Iwasaki W; Majidian S; Manzano-Morales S; Persson E; Richards TA; Gabaldón T; Sonnhammer E; Thomas PD; Dessimoz C; Ebersberger I
    Genome Biol Evol; 2024 Oct; 16(10):. PubMed ID: 39404012
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Advances and Applications in the Quest for Orthologs.
    Glover N; Dessimoz C; Ebersberger I; Forslund SK; Gabaldón T; Huerta-Cepas J; Martin MJ; Muffato M; Patricio M; Pereira C; da Silva AS; Wang Y; Sonnhammer E; Thomas PD
    Mol Biol Evol; 2019 Oct; 36(10):2157-2164. PubMed ID: 31241141
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
    Remm M; Storm CE; Sonnhammer EL
    J Mol Biol; 2001 Dec; 314(5):1041-52. PubMed ID: 11743721
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Integrating gene annotation with orthology inference at scale.
    Kirilenko BM; Munegowda C; Osipova E; Jebb D; Sharma V; Blumer M; Morales AE; Ahmed AW; Kontopoulos DG; Hilgers L; Lindblad-Toh K; Karlsson EK; ; Hiller M
    Science; 2023 Apr; 380(6643):eabn3107. PubMed ID: 37104600
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The Plant Orthology Browser: An Orthology and Gene-Order Visualizer for Plant Comparative Genomics.
    Tulpan D; Leger S
    Plant Genome; 2017 Mar; 10(1):. PubMed ID: 28464063
    [TBL] [Abstract][Full Text] [Related]  

  • 6. OGS2: genome re-annotation of the jewel wasp Nasonia vitripennis.
    Rago A; Gilbert DG; Choi JH; Sackton TB; Wang X; Kelkar YD; Werren JH; Colbourne JK
    BMC Genomics; 2016 Aug; 17(1):678. PubMed ID: 27561358
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Big data and other challenges in the quest for orthologs.
    Sonnhammer EL; Gabaldón T; Sousa da Silva AW; Martin M; Robinson-Rechavi M; Boeckmann B; Thomas PD; Dessimoz C;
    Bioinformatics; 2014 Nov; 30(21):2993-8. PubMed ID: 25064571
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structural and Functional Annotation of Long Noncoding RNAs.
    Smith MA; Mattick JS
    Methods Mol Biol; 2017; 1526():65-85. PubMed ID: 27896736
    [TBL] [Abstract][Full Text] [Related]  

  • 9. zDB: bacterial comparative genomics made easy.
    Marquis B; Pillonel T; Carrara A; Bertelli C
    mSystems; 2024 Jul; 9(7):e0047324. PubMed ID: 38940522
    [TBL] [Abstract][Full Text] [Related]  

  • 10. KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases.
    Huang LC; Taujale R; Gravel N; Venkat A; Yeung W; Byrne DP; Eyers PA; Kannan N
    BMC Bioinformatics; 2021 Sep; 22(1):446. PubMed ID: 34537014
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Twelve quick steps for genome assembly and annotation in the classroom.
    Jung H; Ventura T; Chung JS; Kim WJ; Nam BH; Kong HJ; Kim YO; Jeon MS; Eyun SI
    PLoS Comput Biol; 2020 Nov; 16(11):e1008325. PubMed ID: 33180771
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Hieranoid: hierarchical orthology inference.
    Schreiber F; Sonnhammer ELL
    J Mol Biol; 2013 Jun; 425(11):2072-2081. PubMed ID: 23485417
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Ortholog identification in the presence of domain architecture rearrangement.
    Sjölander K; Datta RS; Shen Y; Shoffner GM
    Brief Bioinform; 2011 Sep; 12(5):413-22. PubMed ID: 21712343
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Comparative Genomics in Drosophila.
    Oti M; Pane A; Sammeth M
    Methods Mol Biol; 2018; 1704():433-450. PubMed ID: 29277877
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Ten Years of Collaborative Progress in the Quest for Orthologs.
    Linard B; Ebersberger I; McGlynn SE; Glover N; Mochizuki T; Patricio M; Lecompte O; Nevers Y; Thomas PD; Gabaldón T; Sonnhammer E; Dessimoz C; Uchiyama I;
    Mol Biol Evol; 2021 Jul; 38(8):3033-3045. PubMed ID: 33822172
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Protein-Coding Gene Families in Prokaryote Genome Comparisons.
    Carhuaricra-Huaman D; Setubal JC
    Methods Mol Biol; 2024; 2802():33-55. PubMed ID: 38819555
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A meta-approach for improving the prediction and the functional annotation of ortholog groups.
    Pereira C; Denise A; Lespinet O
    BMC Genomics; 2014; 15 Suppl 6(Suppl 6):S16. PubMed ID: 25573073
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Inferring Orthology and Paralogy.
    Altenhoff AM; Glover NM; Dessimoz C
    Methods Mol Biol; 2019; 1910():149-175. PubMed ID: 31278664
    [TBL] [Abstract][Full Text] [Related]  

  • 19.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 12.