These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

169 related articles for article (PubMed ID: 39477926)

  • 21. The accuracy of protein models automatically built into cryo-EM maps with ARP/wARP.
    Chojnowski G; Sobolev E; Heuser P; Lamzin VS
    Acta Crystallogr D Struct Biol; 2021 Feb; 77(Pt 2):142-150. PubMed ID: 33559604
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Improvement of cryo-EM maps by simultaneous local and non-local deep learning.
    He J; Li T; Huang SY
    Nat Commun; 2023 Jun; 14(1):3217. PubMed ID: 37270635
    [TBL] [Abstract][Full Text] [Related]  

  • 23. De novo atomic protein structure modeling for cryoEM density maps using 3D transformer and HMM.
    Giri N; Cheng J
    Nat Commun; 2024 Jun; 15(1):5511. PubMed ID: 38951555
    [TBL] [Abstract][Full Text] [Related]  

  • 24. A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps.
    Terwilliger TC; Adams PD; Afonine PV; Sobolev OV
    Nat Methods; 2018 Nov; 15(11):905-908. PubMed ID: 30377346
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Protein secondary structure detection in intermediate-resolution cryo-EM maps using deep learning.
    Maddhuri Venkata Subramaniya SR; Terashi G; Kihara D
    Nat Methods; 2019 Sep; 16(9):911-917. PubMed ID: 31358979
    [TBL] [Abstract][Full Text] [Related]  

  • 26. DeepTracer-ID: De novo protein identification from cryo-EM maps.
    Chang L; Wang F; Connolly K; Meng H; Su Z; Cvirkaite-Krupovic V; Krupovic M; Egelman EH; Si D
    Biophys J; 2022 Aug; 121(15):2840-2848. PubMed ID: 35769006
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Advances in Structure Modeling Methods for Cryo-Electron Microscopy Maps.
    Alnabati E; Kihara D
    Molecules; 2019 Dec; 25(1):. PubMed ID: 31878333
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Deep learning for reconstructing protein structures from cryo-EM density maps: Recent advances and future directions.
    Giri N; Roy RS; Cheng J
    Curr Opin Struct Biol; 2023 Apr; 79():102536. PubMed ID: 36773336
    [TBL] [Abstract][Full Text] [Related]  

  • 29. DEMO-EM2: assembling protein complex structures from cryo-EM maps through intertwined chain and domain fitting.
    Zhang Z; Cai Y; Zhang B; Zheng W; Freddolino L; Zhang G; Zhou X
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38517699
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Protein Structural Modeling for Electron Microscopy Maps Using VESPER and MAINMAST.
    Alnabati E; Terashi G; Kihara D
    Curr Protoc; 2022 Jul; 2(7):e494. PubMed ID: 35849043
    [TBL] [Abstract][Full Text] [Related]  

  • 31. De novo computational RNA modeling into cryo-EM maps of large ribonucleoprotein complexes.
    Kappel K; Liu S; Larsen KP; Skiniotis G; Puglisi EV; Puglisi JD; Zhou ZH; Zhao R; Das R
    Nat Methods; 2018 Nov; 15(11):947-954. PubMed ID: 30377372
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Current approaches for automated model building into cryo-EM maps using Buccaneer with CCP-EM.
    Hoh SW; Burnley T; Cowtan K
    Acta Crystallogr D Struct Biol; 2020 Jun; 76(Pt 6):531-541. PubMed ID: 32496215
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Cryo2StructData: A Large Labeled Cryo-EM Density Map Dataset for AI-based Modeling of Protein Structures.
    Giri N; Wang L; Cheng J
    Sci Data; 2024 May; 11(1):458. PubMed ID: 38710720
    [TBL] [Abstract][Full Text] [Related]  

  • 34. Deep Learning for Validating and Estimating Resolution of Cryo-Electron Microscopy Density Maps
    Avramov TK; Vyenielo D; Gomez-Blanco J; Adinarayanan S; Vargas J; Si D
    Molecules; 2019 Mar; 24(6):. PubMed ID: 30917528
    [TBL] [Abstract][Full Text] [Related]  

  • 35. De novo main-chain modeling for EM maps using MAINMAST.
    Terashi G; Kihara D
    Nat Commun; 2018 Apr; 9(1):1618. PubMed ID: 29691408
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Building Protein Atomic Models from Cryo-EM Density Maps and Residue Co-Evolution.
    Bouvier G; Bardiaux B; Pellarin R; Rapisarda C; Nilges M
    Biomolecules; 2022 Sep; 12(9):. PubMed ID: 36139128
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Automated model building and protein identification in cryo-EM maps.
    Jamali K; Käll L; Zhang R; Brown A; Kimanius D; Scheres SHW
    bioRxiv; 2023 Oct; ():. PubMed ID: 37292681
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Computational methods for constructing protein structure models from 3D electron microscopy maps.
    Esquivel-Rodríguez J; Kihara D
    J Struct Biol; 2013 Oct; 184(1):93-102. PubMed ID: 23796504
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Current approaches for the fitting and refinement of atomic models into cryo-EM maps using CCP-EM.
    Nicholls RA; Tykac M; Kovalevskiy O; Murshudov GN
    Acta Crystallogr D Struct Biol; 2018 Jun; 74(Pt 6):492-505. PubMed ID: 29872001
    [TBL] [Abstract][Full Text] [Related]  

  • 40. A fragment based method for modeling of protein segments into cryo-EM density maps.
    Ismer J; Rose AS; Tiemann JKS; Hildebrand PW
    BMC Bioinformatics; 2017 Nov; 18(1):475. PubMed ID: 29132296
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 9.