These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 39516853)

  • 1. scDOT: optimal transport for mapping senescent cells in spatial transcriptomics.
    Nguyen ND; Rosas L; Khaliullin T; Jiang P; Hasanaj E; Ovando-Ricardez JA; Bueno M; Rahman I; Pryhuber GS; Li D; Ma Q; Finkel T; Königshoff M; Eickelberg O; Rojas M; Mora AL; Lugo-Martinez J; Bar-Joseph Z
    Genome Biol; 2024 Nov; 25(1):288. PubMed ID: 39516853
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Analysis of individual cells identifies cell-to-cell variability following induction of cellular senescence.
    Wiley CD; Flynn JM; Morrissey C; Lebofsky R; Shuga J; Dong X; Unger MA; Vijg J; Melov S; Campisi J
    Aging Cell; 2017 Oct; 16(5):1043-1050. PubMed ID: 28699239
    [TBL] [Abstract][Full Text] [Related]  

  • 3. SpatialPrompt: spatially aware scalable and accurate tool for spot deconvolution and domain identification in spatial transcriptomics.
    Swain AK; Pandit V; Sharma J; Yadav P
    Commun Biol; 2024 May; 7(1):639. PubMed ID: 38796505
    [TBL] [Abstract][Full Text] [Related]  

  • 4. STdGCN: spatial transcriptomic cell-type deconvolution using graph convolutional networks.
    Li Y; Luo Y
    Genome Biol; 2024 Aug; 25(1):206. PubMed ID: 39103939
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Integration of single-cell and spatial transcriptome sequencing identifies CDKN2A as a senescent biomarker in endothelial cells implicating hepatocellular carcinoma malignancy.
    Ma Y; Yi C; Cai N; Chen J
    J Cancer Res Clin Oncol; 2024 Nov; 150(11):487. PubMed ID: 39503880
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Deciphering cell-cell communication at single-cell resolution for spatial transcriptomics with subgraph-based graph attention network.
    Yang W; Wang P; Xu S; Wang T; Luo M; Cai Y; Xu C; Xue G; Que J; Ding Q; Jin X; Yang Y; Pang F; Pang B; Lin Y; Nie H; Xu Z; Ji Y; Jiang Q
    Nat Commun; 2024 Aug; 15(1):7101. PubMed ID: 39155292
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Spotless, a reproducible pipeline for benchmarking cell type deconvolution in spatial transcriptomics.
    Sang-Aram C; Browaeys R; Seurinck R; Saeys Y
    Elife; 2024 May; 12():. PubMed ID: 38787371
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Spatially informed cell-type deconvolution for spatial transcriptomics.
    Ma Y; Zhou X
    Nat Biotechnol; 2022 Sep; 40(9):1349-1359. PubMed ID: 35501392
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Spatial transcriptomic analysis reveals inflammatory foci defined by senescent cells in the white matter, hippocampi and cortical grey matter in the aged mouse brain.
    Kiss T; Nyúl-Tóth Á; DelFavero J; Balasubramanian P; Tarantini S; Faakye J; Gulej R; Ahire C; Ungvari A; Yabluchanskiy A; Wiley G; Garman L; Ungvari Z; Csiszar A
    Geroscience; 2022 Apr; 44(2):661-681. PubMed ID: 35098444
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Encoding Method of Single-cell Spatial Transcriptomics Sequencing.
    Zhou Y; Jia E; Pan M; Zhao X; Ge Q
    Int J Biol Sci; 2020; 16(14):2663-2674. PubMed ID: 32792863
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Gene selection for optimal prediction of cell position in tissues from single-cell transcriptomics data.
    Tanevski J; Nguyen T; Truong B; Karaiskos N; Ahsen ME; Zhang X; Shu C; Xu K; Liang X; Hu Y; Pham HV; Xiaomei L; Le TD; Tarca AL; Bhatti G; Romero R; Karathanasis N; Loher P; Chen Y; Ouyang Z; Mao D; Zhang Y; Zand M; Ruan J; Hafemeister C; Qiu P; Tran D; Nguyen T; Gabor A; Yu T; Guinney J; Glaab E; Krause R; Banda P; ; Stolovitzky G; Rajewsky N; Saez-Rodriguez J; Meyer P
    Life Sci Alliance; 2020 Nov; 3(11):. PubMed ID: 32972997
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Recovering single-cell expression profiles from spatial transcriptomics with scResolve.
    Chen H; Lee YJ; Ovando-Ricardez JA; Rosas L; Rojas M; Mora AL; Bar-Joseph Z; Lugo-Martinez J
    Cell Rep Methods; 2024 Oct; 4(10):100864. PubMed ID: 39326411
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Transcriptomic Analysis of Cellular Senescence: One Step Closer to Senescence Atlas.
    Kim S; Kim C
    Mol Cells; 2021 Mar; 44(3):136-145. PubMed ID: 33795532
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Dual decoding of cell types and gene expression in spatial transcriptomics with PANDA.
    Wang MG; Chen L; Zhang XF
    Nucleic Acids Res; 2024 Nov; 52(20):12173-12190. PubMed ID: 39404057
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Single-cell genomics and spatial transcriptomics: Discovery of novel cell states and cellular interactions in liver physiology and disease biology.
    Saviano A; Henderson NC; Baumert TF
    J Hepatol; 2020 Nov; 73(5):1219-1230. PubMed ID: 32534107
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Hidden Markov random field models for cell-type assignment of spatially resolved transcriptomics.
    Zhong C; Tian T; Wei Z
    Bioinformatics; 2023 Nov; 39(11):. PubMed ID: 37944045
    [TBL] [Abstract][Full Text] [Related]  

  • 17. STGAT: Graph attention networks for deconvolving spatial transcriptomics data.
    Li W; Zhang H; Wang L; Wang P; Yu K
    Comput Methods Programs Biomed; 2024 Dec; 257():108431. PubMed ID: 39461117
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Leveraging spatial transcriptomics data to recover cell locations in single-cell RNA-seq with CeLEry.
    Zhang Q; Jiang S; Schroeder A; Hu J; Li K; Zhang B; Dai D; Lee EB; Xiao R; Li M
    Nat Commun; 2023 Jul; 14(1):4050. PubMed ID: 37422469
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Benchmarking spatial and single-cell transcriptomics integration methods for transcript distribution prediction and cell type deconvolution.
    Li B; Zhang W; Guo C; Xu H; Li L; Fang M; Hu Y; Zhang X; Yao X; Tang M; Liu K; Zhao X; Lin J; Cheng L; Chen F; Xue T; Qu K
    Nat Methods; 2022 Jun; 19(6):662-670. PubMed ID: 35577954
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SPANN: annotating single-cell resolution spatial transcriptome data with scRNA-seq data.
    Yuan M; Wan H; Wang Z; Guo Q; Deng M
    Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38279647
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.