158 related articles for article (PubMed ID: 7476130)
1. The robustness of two phylogenetic methods: four-taxon simulations reveal a slight superiority of maximum likelihood over neighbor joining.
Huelsenbeck JP
Mol Biol Evol; 1995 Sep; 12(5):843-9. PubMed ID: 7476130
[TBL] [Abstract][Full Text] [Related]
2. Relative efficiencies of the maximum-likelihood, neighbor-joining, and maximum-parsimony methods when substitution rate varies with site.
Tateno Y; Takezaki N; Nei M
Mol Biol Evol; 1994 Mar; 11(2):261-77. PubMed ID: 8170367
[TBL] [Abstract][Full Text] [Related]
3. Phylogenetic analysis and intraspecific variation: performance of parsimony, likelihood, and distance methods.
Wiens JJ; Servedio MR
Syst Biol; 1998 Jun; 47(2):228-53. PubMed ID: 12064228
[TBL] [Abstract][Full Text] [Related]
4. Theoretical foundation to estimate the relative efficiencies of the Jukes-Cantor+gamma model and the Jukes-Cantor model in obtaining the correct phylogenetic tree.
Som A
Gene; 2006 Dec; 385():103-10. PubMed ID: 16979305
[TBL] [Abstract][Full Text] [Related]
5. Mathematical and Simulation-Based Analysis of the Behavior of Admixed Taxa in the Neighbor-Joining Algorithm.
Kim J; Disanto F; Kopelman NM; Rosenberg NA
Bull Math Biol; 2019 Feb; 81(2):452-493. PubMed ID: 29876842
[TBL] [Abstract][Full Text] [Related]
6. Efficiencies of fast algorithms of phylogenetic inference under the criteria of maximum parsimony, minimum evolution, and maximum likelihood when a large number of sequences are used.
Takahashi K; Nei M
Mol Biol Evol; 2000 Aug; 17(8):1251-8. PubMed ID: 10908645
[TBL] [Abstract][Full Text] [Related]
7. On inconsistency of the neighbor-joining, least squares, and minimum evolution estimation when substitution processes are incorrectly modeled.
Susko E; Inagaki Y; Roger AJ
Mol Biol Evol; 2004 Sep; 21(9):1629-42. PubMed ID: 15155796
[TBL] [Abstract][Full Text] [Related]
8. Outgroup misplacement and phylogenetic inaccuracy under a molecular clock--a simulation study.
Holland BR; Penny D; Hendy MD
Syst Biol; 2003 Apr; 52(2):229-38. PubMed ID: 12746148
[TBL] [Abstract][Full Text] [Related]
9. Relative efficiencies of the maximum likelihood, maximum parsimony, and neighbor-joining methods for estimating protein phylogeny.
Hasegawa M; Fujiwara M
Mol Phylogenet Evol; 1993 Mar; 2(1):1-5. PubMed ID: 8081543
[TBL] [Abstract][Full Text] [Related]
10. NJML: a hybrid algorithm for the neighbor-joining and maximum-likelihood methods.
Ota S; Li WH
Mol Biol Evol; 2000 Sep; 17(9):1401-9. PubMed ID: 10958856
[TBL] [Abstract][Full Text] [Related]
11. Efficiencies of the NJp, Maximum Likelihood, and Bayesian Methods of Phylogenetic Construction for Compositional and Noncompositional Genes.
Yoshida R; Nei M
Mol Biol Evol; 2016 Jun; 33(6):1618-24. PubMed ID: 26929244
[TBL] [Abstract][Full Text] [Related]
12. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates.
Kuhner MK; Felsenstein J
Mol Biol Evol; 1994 May; 11(3):459-68. PubMed ID: 8015439
[TBL] [Abstract][Full Text] [Related]
13. DO PHYLOGENETIC METHODS PRODUCE TREES WITH BIASED SHAPES?
Huelsenbeck JP; Kirkpatrick M
Evolution; 1996 Aug; 50(4):1418-1424. PubMed ID: 28565707
[TBL] [Abstract][Full Text] [Related]
14. A genetic algorithm for maximum-likelihood phylogeny inference using nucleotide sequence data.
Lewis PO
Mol Biol Evol; 1998 Mar; 15(3):277-83. PubMed ID: 9501494
[TBL] [Abstract][Full Text] [Related]
15. EM for phylogenetic topology reconstruction on nonhomogeneous data.
Ibáñez-Marcelo E; Casanellas M
BMC Evol Biol; 2014 Jun; 14():132. PubMed ID: 24938507
[TBL] [Abstract][Full Text] [Related]
16. The problem of rooting rapid radiations.
Shavit L; Penny D; Hendy MD; Holland BR
Mol Biol Evol; 2007 Nov; 24(11):2400-11. PubMed ID: 17720690
[TBL] [Abstract][Full Text] [Related]
17. Long branch effects distort maximum likelihood phylogenies in simulations despite selection of the correct model.
Kück P; Mayer C; Wägele JW; Misof B
PLoS One; 2012; 7(5):e36593. PubMed ID: 22662120
[TBL] [Abstract][Full Text] [Related]
18. Reconstructing phylogeny by quadratically approximated maximum likelihood.
Woodhams MD; Hendy MD
Bioinformatics; 2004 Aug; 20 Suppl 1():i348-54. PubMed ID: 15262819
[TBL] [Abstract][Full Text] [Related]
19. The behavior of admixed populations in neighbor-joining inference of population trees.
Kopelman NM; Stone L; Gascuel O; Rosenberg NA
Pac Symp Biocomput; 2013; ():273-84. PubMed ID: 23424132
[TBL] [Abstract][Full Text] [Related]
20. Invariant Versus Classical Quartet Inference When Evolution is Heterogeneous Across Sites and Lineages.
Fernández-Sánchez J; Casanellas M
Syst Biol; 2016 Mar; 65(2):280-91. PubMed ID: 26559009
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]