These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. Molecular interactions and metal binding in the theophylline-binding core of an RNA aptamer. Zimmermann GR; Wick CL; Shields TP; Jenison RD; Pardi A RNA; 2000 May; 6(5):659-67. PubMed ID: 10836787 [TBL] [Abstract][Full Text] [Related]
3. Three-dimensional model of a selective theophylline-binding RNA molecule. Tung CS; Oprea TI; Hummer G; García AE J Mol Recognit; 1996; 9(4):275-86. PubMed ID: 9131469 [TBL] [Abstract][Full Text] [Related]
6. Ultrafast dynamics show that the theophylline and 3-methylxanthine aptamers employ a conformational capture mechanism for binding their ligands. Lee SW; Zhao L; Pardi A; Xia T Biochemistry; 2010 Apr; 49(13):2943-51. PubMed ID: 20214401 [TBL] [Abstract][Full Text] [Related]
7. Unusually short RNA sequences: design of a 13-mer RNA that selectively binds and recognizes theophylline. Anderson PC; Mecozzi S J Am Chem Soc; 2005 Apr; 127(15):5290-1. PubMed ID: 15826145 [TBL] [Abstract][Full Text] [Related]
8. A biosensor for theophylline based on fluorescence detection of ligand-induced hammerhead ribozyme cleavage. Sekella PT; Rueda D; Walter NG RNA; 2002 Oct; 8(10):1242-52. PubMed ID: 12403463 [TBL] [Abstract][Full Text] [Related]
9. Free energy calculations for theophylline binding to an RNA aptamer: Comparison of MM-PBSA and thermodynamic integration methods. Gouda H; Kuntz ID; Case DA; Kollman PA Biopolymers; 2003 Jan; 68(1):16-34. PubMed ID: 12579577 [TBL] [Abstract][Full Text] [Related]
10. Adaptive recognition by nucleic acid aptamers. Hermann T; Patel DJ Science; 2000 Feb; 287(5454):820-5. PubMed ID: 10657289 [TBL] [Abstract][Full Text] [Related]
11. Structure, recognition and discrimination in RNA aptamer complexes with cofactors, amino acids, drugs and aminoglycoside antibiotics. Patel DJ; Suri AK J Biotechnol; 2000 Mar; 74(1):39-60. PubMed ID: 10943571 [TBL] [Abstract][Full Text] [Related]
12. A semiconserved residue inhibits complex formation by stabilizing interactions in the free state of a theophylline-binding RNA. Zimmermann GR; Shields TP; Jenison RD; Wick CL; Pardi A Biochemistry; 1998 Jun; 37(25):9186-92. PubMed ID: 9636066 [TBL] [Abstract][Full Text] [Related]
14. Refinement of local and long-range structural order in theophylline-binding RNA using (13)C-(1)H residual dipolar couplings and restrained molecular dynamics. Sibille N; Pardi A; Simorre JP; Blackledge M J Am Chem Soc; 2001 Dec; 123(49):12135-46. PubMed ID: 11734011 [TBL] [Abstract][Full Text] [Related]
15. Detection of small organic analytes by fluorescing molecular switches. Frauendorf C; Jäschke A Bioorg Med Chem; 2001 Oct; 9(10):2521-4. PubMed ID: 11557338 [TBL] [Abstract][Full Text] [Related]
16. Role of a heterogeneous free state in the formation of a specific RNA-theophylline complex. Jucker FM; Phillips RM; McCallum SA; Pardi A Biochemistry; 2003 Mar; 42(9):2560-7. PubMed ID: 12614150 [TBL] [Abstract][Full Text] [Related]
17. Discovery of small molecules that target a tertiary-structured RNA. Menichelli E; Lam BJ; Wang Y; Wang VS; Shaffer J; Tjhung KF; Bursulaya B; Nguyen TN; Vo T; Alper PB; McAllister CS; Jones DH; Spraggon G; Michellys PY; Joslin J; Joyce GF; Rogers J Proc Natl Acad Sci U S A; 2022 Nov; 119(48):e2213117119. PubMed ID: 36413497 [TBL] [Abstract][Full Text] [Related]
18. Mechanism of Ligand Binding to Theophylline RNA Aptamer. Akhter S; Tang Z; Wang J; Haboro M; Holmstrom ED; Wang J; Miao Y J Chem Inf Model; 2024 Feb; 64(3):1017-1029. PubMed ID: 38226603 [TBL] [Abstract][Full Text] [Related]
19. Minimum sequence requirements for selective RNA-ligand binding: a molecular mechanics algorithm using molecular dynamics and free-energy techniques. Anderson PC; Mecozzi S J Comput Chem; 2006 Nov; 27(14):1631-40. PubMed ID: 16900493 [TBL] [Abstract][Full Text] [Related]
20. RNA binding efficacy of theophylline, theobromine and caffeine. Johnson IM; Kumar SG; Malathi R J Biomol Struct Dyn; 2003 Apr; 20(5):687-92. PubMed ID: 12643771 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]