BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 7540695)

  • 1. The volume of atoms on the protein surface: calculated from simulation, using Voronoi polyhedra.
    Gerstein M; Tsai J; Levitt M
    J Mol Biol; 1995 Jun; 249(5):955-66. PubMed ID: 7540695
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking.
    Li AJ; Nussinov R
    Proteins; 1998 Jul; 32(1):111-27. PubMed ID: 9672047
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hydration of proteins. A comparison of experimental residence times of water molecules solvating the bovine pancreatic trypsin inhibitor with theoretical model calculations.
    Brunne RM; Liepinsh E; Otting G; Wüthrich K; van Gunsteren WF
    J Mol Biol; 1993 Jun; 231(4):1040-8. PubMed ID: 7685828
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular surface generation using a variable-radius solvent probe.
    Bhat S; Purisima EO
    Proteins; 2006 Jan; 62(1):244-61. PubMed ID: 16287115
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Structural features of protein-nucleic acid recognition sites.
    Nadassy K; Wodak SJ; Janin J
    Biochemistry; 1999 Feb; 38(7):1999-2017. PubMed ID: 10026283
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Statistical and molecular dynamics studies of buried waters in globular proteins.
    Park S; Saven JG
    Proteins; 2005 Aug; 60(3):450-63. PubMed ID: 15937899
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Fluctuation and cross-correlation analysis of protein motions observed in nanosecond molecular dynamics simulations.
    Hünenberger PH; Mark AE; van Gunsteren WF
    J Mol Biol; 1995 Sep; 252(4):492-503. PubMed ID: 7563068
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy.
    Guvench O; Weiser J; Shenkin P; Kolossváry I; Still WC
    J Comput Chem; 2002 Jan; 23(2):214-21. PubMed ID: 11924735
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Voronoi space division of a polymer: topological effects, free volume, and surface end segregation.
    Tokita N; Hirabayashi M; Azuma C; Dotera T
    J Chem Phys; 2004 Jan; 120(1):496-505. PubMed ID: 15267311
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Volumetric properties of hydrated peptides: Voronoi-Delaunay analysis of molecular simulation runs.
    Voloshin VP; Medvedev NN; Andrews MN; Burri RR; Winter R; Geiger A
    J Phys Chem B; 2011 Dec; 115(48):14217-28. PubMed ID: 21999345
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Hydration and dewetting near graphite-CH(3) and graphite-COOH plates.
    Li J; Liu T; Li X; Ye L; Chen H; Fang H; Wu Z; Zhou R
    J Phys Chem B; 2005 Jul; 109(28):13639-48. PubMed ID: 16852709
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Assessing methods for identifying pair-wise atomic contacts across binding interfaces.
    Fischer TB; Holmes JB; Miller IR; Parsons JR; Tung L; Hu JC; Tsai J
    J Struct Biol; 2006 Feb; 153(2):103-12. PubMed ID: 16377205
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The hydration of globular proteins as derived from volume and compressibility measurements: cross correlating thermodynamic and structural data.
    Chalikian TV; Totrov M; Abagyan R; Breslauer KJ
    J Mol Biol; 1996 Jul; 260(4):588-603. PubMed ID: 8759322
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Conformational sampling by NMR solution structures calculated with the program DIANA evaluated by comparison with long-time molecular dynamics calculations in explicit water.
    Berndt KD; Güntert P; Wüthrich K
    Proteins; 1996 Mar; 24(3):304-13. PubMed ID: 8778777
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics characterization of n-octyl-beta-D-glucopyranoside micelle structure in aqueous solution.
    Konidala P; He L; Niemeyer B
    J Mol Graph Model; 2006 Sep; 25(1):77-86. PubMed ID: 16386443
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Prediction of a 12-residue loop in bovine pancreatic trypsin inhibitor: effects of buried water.
    Carlacci L
    Biopolymers; 2001 Apr; 58(4):359-73. PubMed ID: 11180050
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Molecular dynamics study of water penetration in staphylococcal nuclease.
    Damjanović A; García-Moreno B; Lattman EE; García AE
    Proteins; 2005 Aug; 60(3):433-49. PubMed ID: 15971206
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A molecular dynamics study of solvent behavior around a protein.
    Komeiji Y; Uebayasi M; Someya J; Yamato I
    Proteins; 1993 Jul; 16(3):268-77. PubMed ID: 8346192
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Molecular dynamics investigation of the effects of a water surface on the aggregation of bent-core molecules.
    Duff N; Mann EK; Lacks DJ
    Langmuir; 2008 May; 24(9):4456-60. PubMed ID: 18366236
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Calculation of standard atomic volumes for RNA and comparison with proteins: RNA is packed more tightly.
    Voss NR; Gerstein M
    J Mol Biol; 2005 Feb; 346(2):477-92. PubMed ID: 15670598
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.