These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 7704657)

  • 1. Flexible algorithm for direct multiple alignment of protein structures and sequences.
    Godzik A; Skolnick J
    Comput Appl Biosci; 1994 Dec; 10(6):587-96. PubMed ID: 7704657
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Pareto optimal pairwise sequence alignment.
    DeRonne KW; Karypis G
    IEEE/ACM Trans Comput Biol Bioinform; 2013; 10(2):481-93. PubMed ID: 23929871
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Protein structure alignment by incremental combinatorial extension (CE) of the optimal path.
    Shindyalov IN; Bourne PE
    Protein Eng; 1998 Sep; 11(9):739-47. PubMed ID: 9796821
    [TBL] [Abstract][Full Text] [Related]  

  • 4. From analysis of protein structural alignments toward a novel approach to align protein sequences.
    Sunyaev SR; Bogopolsky GA; Oleynikova NV; Vlasov PK; Finkelstein AV; Roytberg MA
    Proteins; 2004 Feb; 54(3):569-82. PubMed ID: 14748004
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Alignment of multiple protein structures based on sequence and structure features.
    Madhusudhan MS; Webb BM; Marti-Renom MA; Eswar N; Sali A
    Protein Eng Des Sel; 2009 Sep; 22(9):569-74. PubMed ID: 19587024
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Progressive combinatorial algorithm for multiple structural alignments: application to distantly related proteins.
    Ochagavía ME; Wodak S
    Proteins; 2004 May; 55(2):436-54. PubMed ID: 15048834
    [TBL] [Abstract][Full Text] [Related]  

  • 7. A new algorithm for the alignment of multiple protein structures using Monte Carlo optimization.
    Guda C; Scheeff ED; Bourne PE; Shindyalov IN
    Pac Symp Biocomput; 2001; ():275-86. PubMed ID: 11262947
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Can molecular dynamics simulations help in discriminating correct from erroneous protein 3D models?
    Taly JF; Marin A; Gibrat JF
    BMC Bioinformatics; 2008 Jan; 9():6. PubMed ID: 18179702
    [TBL] [Abstract][Full Text] [Related]  

  • 9. BioShell-Threading: versatile Monte Carlo package for protein 3D threading.
    Gniewek P; Kolinski A; Kloczkowski A; Gront D
    BMC Bioinformatics; 2014 Jan; 15():22. PubMed ID: 24444459
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A method for the improvement of threading-based protein models.
    Kolinski A; Rotkiewicz P; Ilkowski B; Skolnick J
    Proteins; 1999 Dec; 37(4):592-610. PubMed ID: 10651275
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Alignment of protein sequences by their profiles.
    Marti-Renom MA; Madhusudhan MS; Sali A
    Protein Sci; 2004 Apr; 13(4):1071-87. PubMed ID: 15044736
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Protein structure prediction by threading. Why it works and why it does not.
    Mirny LA; Shakhnovich EI
    J Mol Biol; 1998 Oct; 283(2):507-26. PubMed ID: 9769221
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Recursive dynamic programming for adaptive sequence and structure alignment.
    Thiele R; Zimmer R; Lengauer T
    Proc Int Conf Intell Syst Mol Biol; 1995; 3():384-92. PubMed ID: 7584462
    [TBL] [Abstract][Full Text] [Related]  

  • 14. SE: an algorithm for deriving sequence alignment from a pair of superimposed structures.
    Tai CH; Vincent JJ; Kim C; Lee B
    BMC Bioinformatics; 2009 Jan; 10 Suppl 1(Suppl 1):S4. PubMed ID: 19208141
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Towards optimal alignment of protein structure distance matrices.
    Wohlers I; Domingues FS; Klau GW
    Bioinformatics; 2010 Sep; 26(18):2273-80. PubMed ID: 20639543
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Biological Assembly Comparison with VAST.
    Madej T; Marchler-Bauer A; Lanczycki C; Zhang D; Bryant SH
    Methods Mol Biol; 2020; 2112():175-186. PubMed ID: 32006286
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Using CLUSTAL for multiple sequence alignments.
    Higgins DG; Thompson JD; Gibson TJ
    Methods Enzymol; 1996; 266():383-402. PubMed ID: 8743695
    [TBL] [Abstract][Full Text] [Related]  

  • 18. New flexible approaches for multiple sequence alignment.
    Shibuya T; Imai H
    J Comput Biol; 1997; 4(3):385-413. PubMed ID: 9278067
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Accuracy of structure-based sequence alignment of automatic methods.
    Kim C; Lee B
    BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Finding common sequence and structure motifs in a set of RNA sequences.
    Gorodkin J; Heyer LJ; Stormo GD
    Proc Int Conf Intell Syst Mol Biol; 1997; 5():120-3. PubMed ID: 9322025
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.