These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
128 related articles for article (PubMed ID: 7783220)
21. Correlation between knowledge-based and detailed atomic potentials: application to the unfolding of the GCN4 leucine zipper. Mohanty D; Dominy BN; Kolinski A; Brooks CL; Skolnick J Proteins; 1999 Jun; 35(4):447-52. PubMed ID: 10382672 [TBL] [Abstract][Full Text] [Related]
22. Statistical significance of hierarchical multi-body potentials based on Delaunay tessellation and their application in sequence-structure alignment. Munson PJ; Singh RK Protein Sci; 1997 Jul; 6(7):1467-81. PubMed ID: 9232648 [TBL] [Abstract][Full Text] [Related]
23. A consistent set of statistical potentials for quantifying local side-chain and backbone interactions. Fang Q; Shortle D Proteins; 2005 Jul; 60(1):90-6. PubMed ID: 15852305 [TBL] [Abstract][Full Text] [Related]
24. A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking. Li AJ; Nussinov R Proteins; 1998 Jul; 32(1):111-27. PubMed ID: 9672047 [TBL] [Abstract][Full Text] [Related]
25. FACTS: Fast analytical continuum treatment of solvation. Haberthür U; Caflisch A J Comput Chem; 2008 Apr; 29(5):701-15. PubMed ID: 17918282 [TBL] [Abstract][Full Text] [Related]
26. Information and discrimination in pairwise contact potentials. Solis AD; Rackovsky S Proteins; 2008 May; 71(3):1071-87. PubMed ID: 18004788 [TBL] [Abstract][Full Text] [Related]
29. Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation. Bahar I; Jernigan RL J Mol Biol; 1997 Feb; 266(1):195-214. PubMed ID: 9054980 [TBL] [Abstract][Full Text] [Related]
30. Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy. Guvench O; Weiser J; Shenkin P; Kolossváry I; Still WC J Comput Chem; 2002 Jan; 23(2):214-21. PubMed ID: 11924735 [TBL] [Abstract][Full Text] [Related]
31. An empirical energy function for threading protein sequence through the folding motif. Bryant SH; Lawrence CE Proteins; 1993 May; 16(1):92-112. PubMed ID: 8497488 [TBL] [Abstract][Full Text] [Related]
32. Evaluation of short-range interactions as secondary structure energies for protein fold and sequence recognition. Miyazawa S; Jernigan RL Proteins; 1999 Aug; 36(3):347-56. PubMed ID: 10409828 [TBL] [Abstract][Full Text] [Related]
33. Universal solvation model based on solute electron density and on a continuum model of the solvent defined by the bulk dielectric constant and atomic surface tensions. Marenich AV; Cramer CJ; Truhlar DG J Phys Chem B; 2009 May; 113(18):6378-96. PubMed ID: 19366259 [TBL] [Abstract][Full Text] [Related]
34. Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches. Kocher JP; Rooman MJ; Wodak SJ J Mol Biol; 1994 Feb; 235(5):1598-613. PubMed ID: 8107094 [TBL] [Abstract][Full Text] [Related]
35. Statistical potentials extracted from protein structures: how accurate are they? Thomas PD; Dill KA J Mol Biol; 1996 Mar; 257(2):457-69. PubMed ID: 8609636 [TBL] [Abstract][Full Text] [Related]
36. Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding. Matta CF; Bader RF Proteins; 2003 Aug; 52(3):360-99. PubMed ID: 12866050 [TBL] [Abstract][Full Text] [Related]
37. A distance-dependent atomic knowledge-based potential and force for discrimination of native structures from decoys. Mirzaie M; Eslahchi C; Pezeshk H; Sadeghi M Proteins; 2009 Nov; 77(2):454-63. PubMed ID: 19452553 [TBL] [Abstract][Full Text] [Related]
38. Fast accurate evaluation of protein solvent exposure. Zhang N; Zeng C; Wingreen NS Proteins; 2004 Nov; 57(3):565-76. PubMed ID: 15382246 [TBL] [Abstract][Full Text] [Related]
39. De novo protein design. II. Plasticity in sequence space. Koehl P; Levitt M J Mol Biol; 1999 Nov; 293(5):1183-93. PubMed ID: 10547294 [TBL] [Abstract][Full Text] [Related]
40. Fragment-based local statistical potentials derived by combining an alphabet of protein local structures with secondary structures and solvent accessibilities. Li Q; Zhou C; Liu H Proteins; 2009 Mar; 74(4):820-36. PubMed ID: 18704928 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]