78 related articles for article (PubMed ID: 7880545)
1. Identification and analysis of a template-primer (ds-DNA) binding cleft in E. coli DNA polymerase I: an electrostatic potential contour pattern of the modeled structure.
Yadav PN; Modak MJ; Yadav JS
J Mol Recognit; 1994 Sep; 7(3):207-9. PubMed ID: 7880545
[TBL] [Abstract][Full Text] [Related]
2. Binding of DNA to large fragment of DNA polymerase I: identification of strong and weak electrostatic forces and their biological implications.
Yadav PN; Yadav JS; Modak MJ
J Biomol Struct Dyn; 1992 Oct; 10(2):311-6. PubMed ID: 1466811
[TBL] [Abstract][Full Text] [Related]
3. Recognition of sequence-directed DNA structure by the Klenow fragment of DNA polymerase I.
Carver TE; Millar DP
Biochemistry; 1998 Feb; 37(7):1898-904. PubMed ID: 9485315
[TBL] [Abstract][Full Text] [Related]
4. Phe 771 of Escherichia coli DNA polymerase I (Klenow fragment) is the major site for the interaction with the template overhang and the stabilization of the pre-polymerase ternary complex.
Srivastava A; Singh K; Modak MJ
Biochemistry; 2003 Apr; 42(13):3645-54. PubMed ID: 12667054
[TBL] [Abstract][Full Text] [Related]
5. DNA polymerase photoprobe 2-[(4-azidophenacyl)thio]-2'-deoxyadenosine 5'-triphosphate labels an Escherichia coli DNA polymerase I Klenow fragment substrate binding site.
Moore BM; Jalluri RK; Doughty MB
Biochemistry; 1996 Sep; 35(36):11642-51. PubMed ID: 8794744
[TBL] [Abstract][Full Text] [Related]
6. A domain of the Klenow fragment of Escherichia coli DNA polymerase I has polymerase but no exonuclease activity.
Freemont PS; Ollis DL; Steitz TA; Joyce CM
Proteins; 1986 Sep; 1(1):66-73. PubMed ID: 3329725
[TBL] [Abstract][Full Text] [Related]
7. Dimerization of the Klenow fragment of Escherichia coli DNA polymerase I is linked to its mode of DNA binding.
Bailey MF; Van der Schans EJ; Millar DP
Biochemistry; 2007 Jul; 46(27):8085-99. PubMed ID: 17567151
[TBL] [Abstract][Full Text] [Related]
8. Significance of the O-helix residues of Escherichia coli DNA polymerase I in DNA synthesis: dynamics of the dNTP binding pocket.
Kaushik N; Pandey VN; Modak MJ
Biochemistry; 1996 Jun; 35(22):7256-66. PubMed ID: 8679555
[TBL] [Abstract][Full Text] [Related]
9. Contribution of polar residues of the J-helix in the 3'-5' exonuclease activity of Escherichia coli DNA polymerase I (Klenow fragment): Q677 regulates the removal of terminal mismatch.
Singh K; Modak MJ
Biochemistry; 2005 Jun; 44(22):8101-10. PubMed ID: 15924429
[TBL] [Abstract][Full Text] [Related]
10. Structure of DNA polymerase I Klenow fragment bound to duplex DNA.
Beese LS; Derbyshire V; Steitz TA
Science; 1993 Apr; 260(5106):352-5. PubMed ID: 8469987
[TBL] [Abstract][Full Text] [Related]
11. Mechanism for N-acetyl-2-aminofluorene-induced frameshift mutagenesis by Escherichia coli DNA polymerase I (Klenow fragment).
Gill JP; Romano LJ
Biochemistry; 2005 Nov; 44(46):15387-95. PubMed ID: 16285743
[TBL] [Abstract][Full Text] [Related]
12. Use of fluorescence resonance energy transfer to investigate the conformation of DNA substrates bound to the Klenow fragment.
Furey WS; Joyce CM; Osborne MA; Klenerman D; Peliska JA; Balasubramanian S
Biochemistry; 1998 Mar; 37(9):2979-90. PubMed ID: 9485450
[TBL] [Abstract][Full Text] [Related]
13. Crystal structures of an N-terminal fragment from Moloney murine leukemia virus reverse transcriptase complexed with nucleic acid: functional implications for template-primer binding to the fingers domain.
Najmudin S; Coté ML; Sun D; Yohannan S; Montano SP; Gu J; Georgiadis MM
J Mol Biol; 2000 Feb; 296(2):613-32. PubMed ID: 10669612
[TBL] [Abstract][Full Text] [Related]
14. Mechanistic insights into replication across from bulky DNA adducts: a mutant polymerase I allows an N-acetyl-2-aminofluorene adduct to be accommodated during DNA synthesis.
Lone S; Romano LJ
Biochemistry; 2003 Apr; 42(13):3826-34. PubMed ID: 12667073
[TBL] [Abstract][Full Text] [Related]
15. A molecular model of the complete three-dimensional structure of the Klenow fragment of Escherichia coli DNA polymerase I: binding of the dNTP substrate and template-primer.
Yadav PN; Yadav JS; Modak MJ
Biochemistry; 1992 Mar; 31(11):2879-86. PubMed ID: 1550814
[TBL] [Abstract][Full Text] [Related]
16. Use of 2-aminopurine fluorescence to examine conformational changes during nucleotide incorporation by DNA polymerase I (Klenow fragment).
Purohit V; Grindley ND; Joyce CM
Biochemistry; 2003 Sep; 42(34):10200-11. PubMed ID: 12939148
[TBL] [Abstract][Full Text] [Related]
17. Thermodynamic dissection of the polymerizing and editing modes of a DNA polymerase.
Bailey MF; van der Schans EJ; Millar DP
J Mol Biol; 2004 Feb; 336(3):673-93. PubMed ID: 15095980
[TBL] [Abstract][Full Text] [Related]
18. Processive DNA synthesis observed in a polymerase crystal suggests a mechanism for the prevention of frameshift mutations.
Johnson SJ; Taylor JS; Beese LS
Proc Natl Acad Sci U S A; 2003 Apr; 100(7):3895-900. PubMed ID: 12649320
[TBL] [Abstract][Full Text] [Related]
19. Recognition of template-primer and gapped DNA substrates by the human DNA polymerase beta.
Rajendran S; Jezewska MJ; Bujalowski W
J Mol Biol; 2001 May; 308(3):477-500. PubMed ID: 11327782
[TBL] [Abstract][Full Text] [Related]
20. Structure of purine-purine mispairs during misincorporation and extension by Escherichia coli DNA polymerase I.
Kretulskie AM; Spratt TE
Biochemistry; 2006 Mar; 45(11):3740-6. PubMed ID: 16533057
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
