These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

570 related articles for article (PubMed ID: 7892172)

  • 1. Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics.
    Mathiowetz AM; Jain A; Karasawa N; Goddard WA
    Proteins; 1994 Nov; 20(3):227-47. PubMed ID: 7892172
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Application of torsion angle molecular dynamics for efficient sampling of protein conformations.
    Chen J; Im W; Brooks CL
    J Comput Chem; 2005 Nov; 26(15):1565-78. PubMed ID: 16145655
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
    Vorobjev YN; Almagro JC; Hermans J
    Proteins; 1998 Sep; 32(4):399-413. PubMed ID: 9726412
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Development of hardware accelerator for molecular dynamics simulations: a computation board that calculates nonbonded interactions in cooperation with fast multipole method.
    Amisaki T; Toyoda S; Miyagawa H; Kitamura K
    J Comput Chem; 2003 Apr; 24(5):582-92. PubMed ID: 12632472
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Implementation of a symplectic multiple-time-step molecular dynamics algorithm, based on the united-residue mesoscopic potential energy function.
    Rakowski F; Grochowski P; Lesyng B; Liwo A; Scheraga HA
    J Chem Phys; 2006 Nov; 125(20):204107. PubMed ID: 17144690
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Structures of T=1 and T=3 particles of cucumber necrosis virus: evidence of internal scaffolding.
    Katpally U; Kakani K; Reade R; Dryden K; Rochon D; Smith TJ
    J Mol Biol; 2007 Jan; 365(2):502-12. PubMed ID: 17049553
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
    Mukherjee A; Bagchi B
    J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Application of the frozen atom approximation to the GB/SA continuum model for solvation free energy.
    Guvench O; Weiser J; Shenkin P; Kolossváry I; Still WC
    J Comput Chem; 2002 Jan; 23(2):214-21. PubMed ID: 11924735
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A special-purpose computer for molecular dynamics: GRAPE-2A.
    Ito T; Fukushige T; Makino J; Ebisuzaki T; Okumura SK; Sugimoto D; Miyagawa H; Kitamura K
    Proteins; 1994 Oct; 20(2):139-48. PubMed ID: 7846024
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Generalized-ensemble algorithms for molecular simulations of biopolymers.
    Mitsutake A; Sugita Y; Okamoto Y
    Biopolymers; 2001; 60(2):96-123. PubMed ID: 11455545
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A Bayesian method for construction of Markov models to describe dynamics on various time-scales.
    Rains EK; Andersen HC
    J Chem Phys; 2010 Oct; 133(14):144113. PubMed ID: 20949993
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Geometry optimization for peptides and proteins: comparison of Cartesian and internal coordinates.
    Koslover EF; Wales DJ
    J Chem Phys; 2007 Dec; 127(23):234105. PubMed ID: 18154373
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Investigation of conformational equilibrium of polypeptides by internal coordinate stochastic dynamics. Met5-enkephalin.
    Dorofeyev VE; Mazur AK
    J Biomol Struct Dyn; 1993 Aug; 11(1):143-67. PubMed ID: 8216941
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Insertion of peptide chains into lipid membranes: an off-lattice Monte Carlo dynamics model.
    Milik M; Skolnick J
    Proteins; 1993 Jan; 15(1):10-25. PubMed ID: 8451235
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Sampling small-scale and large-scale conformational changes in proteins and molecular complexes.
    Yun MR; Mousseau N; Derreumaux P
    J Chem Phys; 2007 Mar; 126(10):105101. PubMed ID: 17362087
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Application of MDGRAPE-3, a special purpose board for molecular dynamics simulations, to periodic biomolecular systems.
    Kikugawa G; Apostolov R; Kamiya N; Taiji M; Himeno R; Nakamura H; Yonezawa Y
    J Comput Chem; 2009 Jan; 30(1):110-8. PubMed ID: 18524021
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Calculation of the tau dependence of the vibration-internal rotation-overall rotation interactions in CH3OH from molecular structure and molecular dynamics.
    Quade CR
    J Chem Phys; 2005 May; 122(20):204306. PubMed ID: 15945723
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The refined structure of Nudaurelia capensis omega virus reveals control elements for a T = 4 capsid maturation.
    Helgstrand C; Munshi S; Johnson JE; Liljas L
    Virology; 2004 Jan; 318(1):192-203. PubMed ID: 14972547
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 29.