These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 8061184)

  • 21. A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation.
    Efremov RG; Nolde DE; Vergoten G; Arseniev AS
    Biophys J; 1999 May; 76(5):2448-59. PubMed ID: 10233062
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Comparison between denaturant- and temperature-induced unfolding pathways of protein: a lattice Monte Carlo simulation.
    Choi HS; Huh J; Jo WH
    Biomacromolecules; 2004; 5(6):2289-96. PubMed ID: 15530044
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Structure optimization by conformational space annealing in an off-lattice protein model.
    Kim SY; Lee SB; Lee J
    Phys Rev E Stat Nonlin Soft Matter Phys; 2005 Jul; 72(1 Pt 1):011916. PubMed ID: 16090010
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Calculation of protein heat capacity from replica-exchange molecular dynamics simulations with different implicit solvent models.
    Yeh IC; Lee MS; Olson MA
    J Phys Chem B; 2008 Nov; 112(47):15064-73. PubMed ID: 18959439
    [TBL] [Abstract][Full Text] [Related]  

  • 25. Folding simulations of a three-dimensional protein model with a nonspecific hydrophobic energy function.
    Garcia LG; Treptow WL; de Araújo AF
    Phys Rev E Stat Nonlin Soft Matter Phys; 2001 Jul; 64(1 Pt 1):011912. PubMed ID: 11461293
    [TBL] [Abstract][Full Text] [Related]  

  • 26. Validity of Gō models: comparison with a solvent-shielded empirical energy decomposition.
    Paci E; Vendruscolo M; Karplus M
    Biophys J; 2002 Dec; 83(6):3032-8. PubMed ID: 12496075
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Biopolymer structure simulation and optimization via fragment regrowth Monte Carlo.
    Zhang J; Kou SC; Liu JS
    J Chem Phys; 2007 Jun; 126(22):225101. PubMed ID: 17581081
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Dynamics and thermodynamics of beta-hairpin assembly: insights from various simulation techniques.
    Kolinski A; Ilkowski B; Skolnick J
    Biophys J; 1999 Dec; 77(6):2942-52. PubMed ID: 10585918
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Interactions of hydrophobic peptides with lipid bilayers: Monte Carlo simulations with M2delta.
    Kessel A; Shental-Bechor D; Haliloglu T; Ben-Tal N
    Biophys J; 2003 Dec; 85(6):3431-44. PubMed ID: 14645040
    [TBL] [Abstract][Full Text] [Related]  

  • 30. Effect of monomer sequences on conformations of copolymers grafted on spherical nanoparticles: a Monte Carlo simulation study.
    Seifpour A; Spicer P; Nair N; Jayaraman A
    J Chem Phys; 2010 Apr; 132(16):164901. PubMed ID: 20441304
    [TBL] [Abstract][Full Text] [Related]  

  • 31. A free-energy perturbation method based on Monte Carlo simulations using quantum mechanical calculations (QM/MC/FEP method): application to highly solvent-dependent reactions.
    Hori K; Yamaguchi T; Uezu K; Sumimoto M
    J Comput Chem; 2011 Apr; 32(5):778-86. PubMed ID: 21341291
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Hydrophobic regions on protein surfaces. Derivation of the solvation energy from their area distribution in crystallographic protein structures.
    Eisenhaber F
    Protein Sci; 1996 Aug; 5(8):1676-86. PubMed ID: 8844856
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Hydrophobic regions on protein surfaces: definition based on hydration shell structure and a quick method for their computation.
    Eisenhaber F; Argos P
    Protein Eng; 1996 Dec; 9(12):1121-33. PubMed ID: 9010925
    [TBL] [Abstract][Full Text] [Related]  

  • 34. A global model of the protein-solvent interface.
    Lounnas V; Pettitt BM; Phillips GN
    Biophys J; 1994 Mar; 66(3 Pt 1):601-14. PubMed ID: 8011893
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Phase behavior of a lattice hydrophobic oligomer in explicit water.
    Romero-Vargas Castrillón S; Matysiak S; Stillinger FH; Rossky PJ; Debenedetti PG
    J Phys Chem B; 2012 Aug; 116(31):9540-8. PubMed ID: 22823886
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Hydrophobicity within the three-dimensional Mercedes-Benz model: potential of mean force.
    Dias CL; Hynninen T; Ala-Nissila T; Foster AS; Karttunen M
    J Chem Phys; 2011 Feb; 134(6):065106. PubMed ID: 21322739
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Solvent entropy-driven searching for protein modeling examined and tested in simplified models.
    König R; Dandekar T
    Protein Eng; 2001 May; 14(5):329-35. PubMed ID: 11438755
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Effect of surface grafted polymers on the adsorption of different model proteins.
    Jönsson M; Johansson HO
    Colloids Surf B Biointerfaces; 2004 Sep; 37(3-4):71-81. PubMed ID: 15342016
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations.
    Olivella M; Deupi X; Govaerts C; Pardo L
    Biophys J; 2002 Jun; 82(6):3207-13. PubMed ID: 12023245
    [TBL] [Abstract][Full Text] [Related]  

  • 40. MC-PHS: a Monte Carlo implementation of the primary hydration shell for protein folding and design.
    Kentsis A; Mezei M; Osman R
    Biophys J; 2003 Feb; 84(2 Pt 1):805-15. PubMed ID: 12547765
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 10.