BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

201 related articles for article (PubMed ID: 8066082)

  • 1. Helix-forming tendencies of nonpolar amino acids predicted by Monte Carlo simulated annealing.
    Okamoto Y
    Proteins; 1994 May; 19(1):14-23. PubMed ID: 8066082
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Position dependence of non-polar amino acid intrinsic helical propensities.
    Petukhov M; Muñoz V; Yumoto N; Yoshikawa S; Serrano L
    J Mol Biol; 1998 Apr; 278(1):279-89. PubMed ID: 9571050
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Straight-chain non-polar amino acids are good helix-formers in water.
    Padmanabhan S; Baldwin RL
    J Mol Biol; 1991 May; 219(2):135-7. PubMed ID: 2038048
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Hydrogen-bond cooperativity, vibrational coupling, and dependence of helix stability on changes in amino acid sequence in small 3 10-helical peptides. A density functional theory study.
    Wieczorek R; Dannenberg JJ
    J Am Chem Soc; 2003 Nov; 125(46):14065-71. PubMed ID: 14611243
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F
    J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation.
    Efremov RG; Nolde DE; Vergoten G; Arseniev AS
    Biophys J; 1999 May; 76(5):2448-59. PubMed ID: 10233062
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Dependence on the dielectric model and pH in a synthetic helical peptide studied by Monte Carlo simulated annealing.
    Okamoto Y
    Biopolymers; 1994 Apr; 34(4):529-39. PubMed ID: 8186363
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Relative helix-forming tendencies of nonpolar amino acids.
    Padmanabhan S; Marqusee S; Ridgeway T; Laue TM; Baldwin RL
    Nature; 1990 Mar; 344(6263):268-70. PubMed ID: 2314462
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Modeling of folding and unfolding mechanisms in alanine-based alpha-helical polypeptides.
    Morozov AN; Lin SH
    J Phys Chem B; 2006 Oct; 110(41):20555-61. PubMed ID: 17034243
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Statistical analysis of amino acid patterns in transmembrane helices: the GxxxG motif occurs frequently and in association with beta-branched residues at neighboring positions.
    Senes A; Gerstein M; Engelman DM
    J Mol Biol; 2000 Feb; 296(3):921-36. PubMed ID: 10677292
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Alpha-helix stabilization by alanine relative to glycine: roles of polar and apolar solvent exposures and of backbone entropy.
    López-Llano J; Campos LA; Sancho J
    Proteins; 2006 Aug; 64(3):769-78. PubMed ID: 16755589
    [TBL] [Abstract][Full Text] [Related]  

  • 12. The SAAP force field: development of the single amino acid potentials for 20 proteinogenic amino acids and Monte Carlo molecular simulation for short peptides.
    Iwaoka M; Kimura N; Yosida D; Minezaki T
    J Comput Chem; 2009 Oct; 30(13):2039-55. PubMed ID: 19140140
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Folding simulations of gramicidin A into the beta-helix conformations: Simulated annealing molecular dynamics study.
    Mori T; Okamoto Y
    J Chem Phys; 2009 Oct; 131(16):165103. PubMed ID: 19894978
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A pH-dependent variation in alpha-helix structure of the S-peptide of ribonuclease A studied by Monte Carlo simulated annealing.
    Nakazawa T; Ban S; Okuda Y; Masuya M; Mitsutake A; Okamoto Y
    Biopolymers; 2002 Apr; 63(4):273-9. PubMed ID: 11807754
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Structure and assembly of designed beta-hairpin peptides in crystals as models for beta-sheet aggregation.
    Aravinda S; Harini VV; Shamala N; Das C; Balaram P
    Biochemistry; 2004 Feb; 43(7):1832-46. PubMed ID: 14967024
    [TBL] [Abstract][Full Text] [Related]  

  • 16. The occurrence of C--H...O hydrogen bonds in alpha-helices and helix termini in globular proteins.
    Manikandan K; Ramakumar S
    Proteins; 2004 Sep; 56(4):768-81. PubMed ID: 15281129
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Vibrational analysis of amino acids and short peptides in hydrated media. IV. Amino acids with hydrophobic side chains: L-alanine, L-valine, and L-isoleucine.
    Hernández B; Pflüger F; Nsangou M; Ghomi M
    J Phys Chem B; 2009 Mar; 113(10):3169-78. PubMed ID: 19708268
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Monte Carlo simulations of beta-hairpin folding at constant temperature.
    Sung SS
    Biophys J; 1999 Jan; 76(1 Pt 1):164-75. PubMed ID: 9876131
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Cu(II)-catalyzed reactions in ternary [Cu(AA)(AA - H)]+ complexes (AA = Gly, Ala, Val, Leu, Ile, t-Leu, Phe).
    Wang P; Ohanessian G; Wesdemiotis C
    Eur J Mass Spectrom (Chichester); 2009; 15(2):325-35. PubMed ID: 19423917
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Helix-stabilizing interaction between tyrosine and leucine or valine when the spacing is i, i + 4.
    Padmanabhan S; Baldwin RL
    J Mol Biol; 1994 Sep; 241(5):706-13. PubMed ID: 8071994
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.