These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
5. Protein secondary structure prediction using local alignments. Salamov AA; Solovyev VV J Mol Biol; 1997 Apr; 268(1):31-6. PubMed ID: 9149139 [TBL] [Abstract][Full Text] [Related]
6. Secondary structure prediction for modelling by homology. Boscott PE; Barton GJ; Richards WG Protein Eng; 1993 Apr; 6(3):261-6. PubMed ID: 8506260 [TBL] [Abstract][Full Text] [Related]
7. An approach to improving multiple alignments of protein sequences using predicted secondary structure. Jennings AJ; Edge CM; Sternberg MJ Protein Eng; 2001 Apr; 14(4):227-31. PubMed ID: 11391014 [TBL] [Abstract][Full Text] [Related]
8. DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment. Wright ES BMC Bioinformatics; 2015 Oct; 16():322. PubMed ID: 26445311 [TBL] [Abstract][Full Text] [Related]
9. The influence of gapped positions in multiple sequence alignments on secondary structure prediction methods. Simossis VA; Heringa J Comput Biol Chem; 2004 Dec; 28(5-6):351-66. PubMed ID: 15556476 [TBL] [Abstract][Full Text] [Related]
10. Accuracy of structure-based sequence alignment of automatic methods. Kim C; Lee B BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866 [TBL] [Abstract][Full Text] [Related]
11. PROMALS: towards accurate multiple sequence alignments of distantly related proteins. Pei J; Grishin NV Bioinformatics; 2007 Apr; 23(7):802-8. PubMed ID: 17267437 [TBL] [Abstract][Full Text] [Related]
12. Application of protein structure alignments to iterated hidden Markov model protocols for structure prediction. Scheeff ED; Bourne PE BMC Bioinformatics; 2006 Sep; 7():410. PubMed ID: 16970830 [TBL] [Abstract][Full Text] [Related]
13. Multiple sequence threading: an analysis of alignment quality and stability. Taylor WR J Mol Biol; 1997 Jun; 269(5):902-43. PubMed ID: 9223650 [TBL] [Abstract][Full Text] [Related]
14. How reliably can we predict the reliability of protein structure predictions? Miklós I; Novák A; Dombai B; Hein J BMC Bioinformatics; 2008 Mar; 9():137. PubMed ID: 18315874 [TBL] [Abstract][Full Text] [Related]
15. DPANN: improved sequence to structure alignments following fold recognition. Reinhardt A; Eisenberg D Proteins; 2004 Aug; 56(3):528-38. PubMed ID: 15229885 [TBL] [Abstract][Full Text] [Related]
16. PROMALS web server for accurate multiple protein sequence alignments. Pei J; Kim BH; Tang M; Grishin NV Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W649-52. PubMed ID: 17452345 [TBL] [Abstract][Full Text] [Related]
17. Protein secondary structure prediction by the analysis of variation and conservation in multiple alignments. Tuckwell DS; Humphries MJ; Brass A Comput Appl Biosci; 1995 Dec; 11(6):627-32. PubMed ID: 8808579 [TBL] [Abstract][Full Text] [Related]
19. PHD--an automatic mail server for protein secondary structure prediction. Rost B; Sander C; Schneider R Comput Appl Biosci; 1994 Feb; 10(1):53-60. PubMed ID: 8193956 [TBL] [Abstract][Full Text] [Related]
20. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments. Gotoh O J Mol Biol; 1996 Dec; 264(4):823-38. PubMed ID: 8980688 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]