These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

151 related articles for article (PubMed ID: 8460107)

  • 1. Theoretical probes of conformational fluctuations in S-peptide and RNase A/3'-UMP enzyme product complex.
    Straub JE; Thirumalai D
    Proteins; 1993 Apr; 15(4):360-73. PubMed ID: 8460107
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Exploring the energy landscape in proteins.
    Straub JE; Thirumalai D
    Proc Natl Acad Sci U S A; 1993 Feb; 90(3):809-13. PubMed ID: 8430090
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Conformational dynamics of cytochrome c: correlation to hydrogen exchange.
    GarcĂ­a AE; Hummer G
    Proteins; 1999 Aug; 36(2):175-91. PubMed ID: 10398365
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Retardation of the unfolding process by single N-glycosylation of ribonuclease A based on molecular dynamics simulations.
    Choi Y; Lee JH; Hwang S; Kim JK; Jeong K; Jung S
    Biopolymers; 2008 Feb; 89(2):114-23. PubMed ID: 17937402
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein conformational landscapes: energy minimization and clustering of a long molecular dynamics trajectory.
    Troyer JM; Cohen FE
    Proteins; 1995 Sep; 23(1):97-110. PubMed ID: 8539254
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Insight into ribonuclease A domain swapping by molecular dynamics unfolding simulations.
    Esposito L; Daggett V
    Biochemistry; 2005 Mar; 44(9):3358-68. PubMed ID: 15736946
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Efficient evaluation of sampling quality of molecular dynamics simulations by clustering of dihedral torsion angles and Sammon mapping.
    Frickenhaus S; Kannan S; Zacharias M
    J Comput Chem; 2009 Feb; 30(3):479-92. PubMed ID: 18680215
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A molecular dynamics study based post facto free energy analysis of the binding of bovine angiogenin with UMP and CMP ligands.
    Madhusudhan MS; Vishveshwara S; Das A; Kalra P; Jayaram B
    Indian J Biochem Biophys; 2001; 38(1-2):27-33. PubMed ID: 11563327
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Loop propensity of the sequence YKGQP from staphylococcal nuclease: implications for the folding of nuclease.
    Patel S; Sasidhar YU
    J Pept Sci; 2007 Oct; 13(10):679-92. PubMed ID: 17787022
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Dihedral angle principal component analysis of molecular dynamics simulations.
    Altis A; Nguyen PH; Hegger R; Stock G
    J Chem Phys; 2007 Jun; 126(24):244111. PubMed ID: 17614541
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Temperature dependence of the backbone dynamics of ribonuclease A in the ground state and bound to the inhibitor 5'-phosphothymidine (3'-5')pyrophosphate adenosine 3'-phosphate.
    Kovrigin EL; Cole R; Loria JP
    Biochemistry; 2003 May; 42(18):5279-91. PubMed ID: 12731869
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Conformational and helicoidal analysis of the molecular dynamics of proteins: "curves," dials and windows for a 50 psec dynamic trajectory of BPTI.
    Swaminathan S; Ravishanker G; Beveridge DL; Lavery R; Etchebest C; Sklenar H
    Proteins; 1990; 8(2):179-93. PubMed ID: 2235996
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Application of torsion angle molecular dynamics for efficient sampling of protein conformations.
    Chen J; Im W; Brooks CL
    J Comput Chem; 2005 Nov; 26(15):1565-78. PubMed ID: 16145655
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
    Mukherjee A; Bagchi B
    J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Conformation spaces of proteins.
    Sullivan DC; Kuntz ID
    Proteins; 2001 Mar; 42(4):495-511. PubMed ID: 11170204
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assessing equilibration and convergence in biomolecular simulations.
    Smith LJ; Daura X; van Gunsteren WF
    Proteins; 2002 Aug; 48(3):487-96. PubMed ID: 12112673
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Structure and energy landscape of a photoswitchable peptide: a replica exchange molecular dynamics study.
    Nguyen PH; Mu Y; Stock G
    Proteins; 2005 Aug; 60(3):485-94. PubMed ID: 15977160
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Simulated annealing coupled replica exchange molecular dynamics--an efficient conformational sampling method.
    Kannan S; Zacharias M
    J Struct Biol; 2009 Jun; 166(3):288-94. PubMed ID: 19272454
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations.
    Mackerell AD; Feig M; Brooks CL
    J Comput Chem; 2004 Aug; 25(11):1400-15. PubMed ID: 15185334
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.