These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
6. SCARNA: fast and accurate structural alignment of RNA sequences by matching fixed-length stem fragments. Tabei Y; Tsuda K; Kin T; Asai K Bioinformatics; 2006 Jul; 22(14):1723-9. PubMed ID: 16690634 [TBL] [Abstract][Full Text] [Related]
7. T-Coffee: A novel method for fast and accurate multiple sequence alignment. Notredame C; Higgins DG; Heringa J J Mol Biol; 2000 Sep; 302(1):205-17. PubMed ID: 10964570 [TBL] [Abstract][Full Text] [Related]
8. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments. Yang AS; Honig B J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778 [TBL] [Abstract][Full Text] [Related]
9. StructMiner: a tool for alignment and detection of conserved secondary structure. Yang Q; Blanchette M Genome Inform; 2004; 15(2):102-11. PubMed ID: 15706496 [TBL] [Abstract][Full Text] [Related]
11. MoDEL: an efficient strategy for ungapped local multiple alignment. Hernandez D; Gras R; Appel R Comput Biol Chem; 2004 Apr; 28(2):119-28. PubMed ID: 15130540 [TBL] [Abstract][Full Text] [Related]
12. Calculating percent identity between protein or DNA sequences with a word processor. Ladror US Protein Seq Data Anal; 1990 Jul; 3(3):267-71. PubMed ID: 2402483 [TBL] [Abstract][Full Text] [Related]
14. Variable gap penalty for protein sequence-structure alignment. Madhusudhan MS; Marti-Renom MA; Sanchez R; Sali A Protein Eng Des Sel; 2006 Mar; 19(3):129-33. PubMed ID: 16423846 [TBL] [Abstract][Full Text] [Related]
16. PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology. Saebø PE; Andersen SM; Myrseth J; Laerdahl JK; Rognes T Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W535-9. PubMed ID: 15980529 [TBL] [Abstract][Full Text] [Related]
17. Gene structure prediction by spliced alignment of genomic DNA with protein sequences: increased accuracy by differential splice site scoring. Usuka J; Brendel V J Mol Biol; 2000 Apr; 297(5):1075-85. PubMed ID: 10764574 [TBL] [Abstract][Full Text] [Related]