These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
213 related articles for article (PubMed ID: 8539252)
21. Stochastic protein folding simulation in the three-dimensional HP-model. Albrecht AA; Skaliotis A; Steinhöfel K Comput Biol Chem; 2008 Aug; 32(4):248-55. PubMed ID: 18485827 [TBL] [Abstract][Full Text] [Related]
22. Native atomic burials, supplemented by physically motivated hydrogen bond constraints, contain sufficient information to determine the tertiary structure of small globular proteins. Pereira de Araújo AF; Gomes AL; Bursztyn AA; Shakhnovich EI Proteins; 2008 Feb; 70(3):971-83. PubMed ID: 17847091 [TBL] [Abstract][Full Text] [Related]
23. Lattice neural network minimization. Application of neural network optimization for locating the global-minimum conformations of proteins. Rabow AA; Scheraga HA J Mol Biol; 1993 Aug; 232(4):1157-68. PubMed ID: 8371272 [TBL] [Abstract][Full Text] [Related]
24. Ab initio computational modeling of loops in G-protein-coupled receptors: lessons from the crystal structure of rhodopsin. Mehler EL; Hassan SA; Kortagere S; Weinstein H Proteins; 2006 Aug; 64(3):673-90. PubMed ID: 16729264 [TBL] [Abstract][Full Text] [Related]
25. Structural refinement of protein segments containing secondary structure elements: Local sampling, knowledge-based potentials, and clustering. Zhu J; Xie L; Honig B Proteins; 2006 Nov; 65(2):463-79. PubMed ID: 16927337 [TBL] [Abstract][Full Text] [Related]
26. LOOPER: a molecular mechanics-based algorithm for protein loop prediction. Spassov VZ; Flook PK; Yan L Protein Eng Des Sel; 2008 Feb; 21(2):91-100. PubMed ID: 18194981 [TBL] [Abstract][Full Text] [Related]
27. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential. Liu Z; Dominy BN; Shakhnovich EI J Am Chem Soc; 2004 Jul; 126(27):8515-28. PubMed ID: 15238009 [TBL] [Abstract][Full Text] [Related]
28. Prediction of protein loop conformations using multiscale modeling methods with physical energy scoring functions. Olson MA; Feig M; Brooks CL J Comput Chem; 2008 Apr; 29(5):820-31. PubMed ID: 17876760 [TBL] [Abstract][Full Text] [Related]
29. Reduced representation approach to protein tertiary structure prediction: statistical potential and simulated annealing. Sun S J Theor Biol; 1995 Jan; 172(1):13-32. PubMed ID: 7891449 [TBL] [Abstract][Full Text] [Related]
30. Generalized-ensemble algorithms for molecular simulations of biopolymers. Mitsutake A; Sugita Y; Okamoto Y Biopolymers; 2001; 60(2):96-123. PubMed ID: 11455545 [TBL] [Abstract][Full Text] [Related]
31. Prediction of the structures of proteins with the UNRES force field, including dynamic formation and breaking of disulfide bonds. Czaplewski C; Oldziej S; Liwo A; Scheraga HA Protein Eng Des Sel; 2004 Jan; 17(1):29-36. PubMed ID: 14985535 [TBL] [Abstract][Full Text] [Related]
32. Folding the main chain of small proteins with the genetic algorithm. Dandekar T; Argos P J Mol Biol; 1994 Feb; 236(3):844-61. PubMed ID: 8114098 [TBL] [Abstract][Full Text] [Related]
33. On the relation between native geometry and conformational plasticity. Faísca PF; Gomes CM Biophys Chem; 2008 Dec; 138(3):99-106. PubMed ID: 18823691 [TBL] [Abstract][Full Text] [Related]
34. New Monte Carlo algorithms for protein folding. Hansmann UH; Okamoto Y Curr Opin Struct Biol; 1999 Apr; 9(2):177-83. PubMed ID: 10322208 [TBL] [Abstract][Full Text] [Related]
35. SPICKER: a clustering approach to identify near-native protein folds. Zhang Y; Skolnick J J Comput Chem; 2004 Apr; 25(6):865-71. PubMed ID: 15011258 [TBL] [Abstract][Full Text] [Related]
36. Application of the multiensemble sampling to the equilibrium folding of proteins. Son HS; Kim SY; Lee J; Han KK Bioinformatics; 2006 Aug; 22(15):1832-7. PubMed ID: 16766555 [TBL] [Abstract][Full Text] [Related]
38. Density guided importance sampling: application to a reduced model of protein folding. Thomas GL; Sessions RB; Parker MJ Bioinformatics; 2005 Jun; 21(12):2839-43. PubMed ID: 15802285 [TBL] [Abstract][Full Text] [Related]
39. Molecular simulation of polymer assisted protein refolding. Lu D; Liu Z J Chem Phys; 2005 Oct; 123(13):134903. PubMed ID: 16223327 [TBL] [Abstract][Full Text] [Related]
40. Extending the treatment of backbone energetics in protein force fields: limitations of gas-phase quantum mechanics in reproducing protein conformational distributions in molecular dynamics simulations. Mackerell AD; Feig M; Brooks CL J Comput Chem; 2004 Aug; 25(11):1400-15. PubMed ID: 15185334 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]