These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

112 related articles for article (PubMed ID: 8590183)

  • 1. PdbAlign, PdbDist and DistAlign: tools to aid in relating sequence variability to structure.
    Sayle R; Saqi M; Weir M; Lyall A
    Comput Appl Biosci; 1995 Oct; 11(5):571-3. PubMed ID: 8590183
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Identifying distantly related protein sequences.
    Pearson WR
    Comput Appl Biosci; 1997 Aug; 13(4):325-32. PubMed ID: 9283747
    [No Abstract]   [Full Text] [Related]  

  • 3. Incremental threading optimization (TITO) to help alignment and modelling of remote homologues.
    Labesse G; Mornon J
    Bioinformatics; 1998; 14(2):206-11. PubMed ID: 9545453
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Integrated tools for structural and sequence alignment and analysis.
    Huang CC; Novak WR; Babbitt PC; Jewett AI; Ferrin TE; Klein TE
    Pac Symp Biocomput; 2000; ():230-41. PubMed ID: 10902172
    [TBL] [Abstract][Full Text] [Related]  

  • 5. ENVIRON: a software package to compare protein three-dimensional structures with homologous sequences using local structural motifs.
    Bordo D
    Comput Appl Biosci; 1993 Dec; 9(6):639-45. PubMed ID: 8143148
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Segment-based scores for pairwise and multiple sequence alignments.
    Morgenstern B; Atchley WR; Hahn K; Dress A
    Proc Int Conf Intell Syst Mol Biol; 1998; 6():115-21. PubMed ID: 9783216
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein structure modelling from remote sequence similarity.
    Taylor WR
    J Biotechnol; 1994 Jun; 35(2-3):281-91. PubMed ID: 7765064
    [TBL] [Abstract][Full Text] [Related]  

  • 8. RE-MuSiC: a tool for multiple sequence alignment with regular expression constraints.
    Chung YS; Lee WH; Tang CY; Lu CL
    Nucleic Acids Res; 2007 Jul; 35(Web Server issue):W639-44. PubMed ID: 17488842
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Practical aspects of multiple sequence alignment.
    Baxevanis AD
    Methods Biochem Anal; 1998; 39():172-88. PubMed ID: 9707931
    [No Abstract]   [Full Text] [Related]  

  • 10. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Protein sequence alignments: a strategy for the hierarchical analysis of residue conservation.
    Livingstone CD; Barton GJ
    Comput Appl Biosci; 1993 Dec; 9(6):745-56. PubMed ID: 8143162
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Visual BLAST and visual FASTA: graphic workbenches for interactive analysis of full BLAST and FASTA outputs under MICROSOFT WINDOWS 95/NT.
    Durand P; Canard L; Mornon JP
    Comput Appl Biosci; 1997 Aug; 13(4):407-13. PubMed ID: 9283755
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Tools for integrated sequence-structure analysis with UCSF Chimera.
    Meng EC; Pettersen EF; Couch GS; Huang CC; Ferrin TE
    BMC Bioinformatics; 2006 Jul; 7():339. PubMed ID: 16836757
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Pattern-induced multi-sequence alignment (PIMA) algorithm employing secondary structure-dependent gap penalties for use in comparative protein modelling.
    Smith RF; Smith TF
    Protein Eng; 1992 Jan; 5(1):35-41. PubMed ID: 1631044
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A polynomial-time algorithm for a class of protein threading problems.
    Xu Y; Uberbacher EC
    Comput Appl Biosci; 1996 Dec; 12(6):511-7. PubMed ID: 9021270
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Sequences annotated by structure: a tool to facilitate the use of structural information in sequence analysis.
    Milburn D; Laskowski RA; Thornton JM
    Protein Eng; 1998 Oct; 11(10):855-9. PubMed ID: 9862203
    [TBL] [Abstract][Full Text] [Related]  

  • 17. VISTAL--a new 2D visualization tool of protein 3D structural alignments.
    Kolodny R; Honig B
    Bioinformatics; 2006 Sep; 22(17):2166-7. PubMed ID: 16837525
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Sequence alignment and database searching.
    Schuler GD
    Methods Biochem Anal; 1998; 39():145-71. PubMed ID: 9707930
    [No Abstract]   [Full Text] [Related]  

  • 19. Multiple sequence alignment using simulated annealing.
    Kim J; Pramanik S; Chung MJ
    Comput Appl Biosci; 1994 Jul; 10(4):419-26. PubMed ID: 7804875
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A new approach for displaying identities and differences among aligned amino acid sequences.
    Friemann A; Schmitz S
    Comput Appl Biosci; 1992 Jun; 8(3):261-5. PubMed ID: 1633568
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.