These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

86 related articles for article (PubMed ID: 8592703)

  • 1. Parametric sensitivity analysis of avian pancreatic polypeptide (APP).
    Zhang H; Wong CF; Thacher T; Rabitz H
    Proteins; 1995 Oct; 23(2):218-32. PubMed ID: 8592703
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Separation of time scale and coupling in the motion governed by the coarse-grained and fine degrees of freedom in a polypeptide backbone.
    Murarka RK; Liwo A; Scheraga HA
    J Chem Phys; 2007 Oct; 127(15):155103. PubMed ID: 17949219
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
    Vorobjev YN; Almagro JC; Hermans J
    Proteins; 1998 Sep; 32(4):399-413. PubMed ID: 9726412
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The combined simulation approach of atomistic and continuum models for the thermodynamics of lysozyme crystals.
    Chang J; Lenhoff AM; Sandler SI
    J Phys Chem B; 2005 Oct; 109(41):19507-15. PubMed ID: 16853520
    [TBL] [Abstract][Full Text] [Related]  

  • 5. CHARMM fluctuating charge force field for proteins: II protein/solvent properties from molecular dynamics simulations using a nonadditive electrostatic model.
    Patel S; Mackerell AD; Brooks CL
    J Comput Chem; 2004 Sep; 25(12):1504-14. PubMed ID: 15224394
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Conformational and helicoidal analysis of the molecular dynamics of proteins: "curves," dials and windows for a 50 psec dynamic trajectory of BPTI.
    Swaminathan S; Ravishanker G; Beveridge DL; Lavery R; Etchebest C; Sklenar H
    Proteins; 1990; 8(2):179-93. PubMed ID: 2235996
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein simulations using techniques suitable for very large systems: the cell multipole method for nonbond interactions and the Newton-Euler inverse mass operator method for internal coordinate dynamics.
    Mathiowetz AM; Jain A; Karasawa N; Goddard WA
    Proteins; 1994 Nov; 20(3):227-47. PubMed ID: 7892172
    [TBL] [Abstract][Full Text] [Related]  

  • 8. FACTS: Fast analytical continuum treatment of solvation.
    Haberthür U; Caflisch A
    J Comput Chem; 2008 Apr; 29(5):701-15. PubMed ID: 17918282
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F
    J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Rational design of ion force fields based on thermodynamic solvation properties.
    Horinek D; Mamatkulov SI; Netz RR
    J Chem Phys; 2009 Mar; 130(12):124507. PubMed ID: 19334851
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Avian pancreatic polypeptide fragments refold to native aPP conformation when combined in solution: a CD and VCD study.
    Copps J; Murphy RF; Lovas S
    Biopolymers; 2006 Sep; 83(1):32-8. PubMed ID: 16628551
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Simulation of protein conformational freedom as a function of pH: constant-pH molecular dynamics using implicit titration.
    Baptista AM; Martel PJ; Petersen SB
    Proteins; 1997 Apr; 27(4):523-44. PubMed ID: 9141133
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A miniprotein scaffold used to assemble the polyproline II binding epitope recognized by SH3 domains.
    Cobos ES; Pisabarro MT; Vega MC; Lacroix E; Serrano L; Ruiz-Sanz J; Martinez JC
    J Mol Biol; 2004 Sep; 342(1):355-65. PubMed ID: 15313630
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model.
    Felts AK; Harano Y; Gallicchio E; Levy RM
    Proteins; 2004 Aug; 56(2):310-21. PubMed ID: 15211514
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Determination of conformational equilibrium of peptides in solution by NMR spectroscopy and theoretical conformational analysis: application to the calibration of mean-field solvation models.
    Groth M; Malicka J; Rodziewicz- Motowidło S; Czaplewski C; Klaudel L; Wiczk W; Liwo A
    Biopolymers; 2001; 60(2):79-95. PubMed ID: 11455544
    [TBL] [Abstract][Full Text] [Related]  

  • 16. New approach to free energy of solvation applying continuum models to molecular dynamics simulation.
    Gonçalves PF; Stassen H
    J Comput Chem; 2002 May; 23(7):706-14. PubMed ID: 11948588
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Calculation of the free energy of polarization: quantifying the effect of explicitly treating electronic polarization on the transferability of force-field parameters.
    Geerke DP; van Gunsteren WF
    J Phys Chem B; 2007 Jun; 111(23):6425-36. PubMed ID: 17508737
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Ab initio protein structure prediction with force field parameters derived from water-phase quantum chemical calculation.
    Katagiri D; Fuji H; Neya S; Hoshino T
    J Comput Chem; 2008 Sep; 29(12):1930-44. PubMed ID: 18366016
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding.
    Matta CF; Bader RF
    Proteins; 2003 Aug; 52(3):360-99. PubMed ID: 12866050
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Conformation, dynamics, solvation and relative stabilities of selected beta-hexopyranoses in water: a molecular dynamics study with the GROMOS 45A4 force field.
    Kräutler V; Müller M; Hünenberger PH
    Carbohydr Res; 2007 Oct; 342(14):2097-124. PubMed ID: 17573054
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 5.