234 related articles for article (PubMed ID: 8771180)
1. A reliable sequence alignment method based on probabilities of residue correspondences.
Miyazawa S
Protein Eng; 1995 Oct; 8(10):999-1009. PubMed ID: 8771180
[TBL] [Abstract][Full Text] [Related]
2. Protein sequence-structure alignment based on site-alignment probabilities.
Miyazawa S
Genome Inform Ser Workshop Genome Inform; 2000; 11():141-50. PubMed ID: 11700595
[TBL] [Abstract][Full Text] [Related]
3. Identifying sequence-structure pairs undetected by sequence alignments.
Miyazawa S; Jernigan RL
Protein Eng; 2000 Jul; 13(7):459-75. PubMed ID: 10906342
[TBL] [Abstract][Full Text] [Related]
4. Using CLUSTAL for multiple sequence alignments.
Higgins DG; Thompson JD; Gibson TJ
Methods Enzymol; 1996; 266():383-402. PubMed ID: 8743695
[TBL] [Abstract][Full Text] [Related]
5. Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments.
Sierk ML; Smoot ME; Bass EJ; Pearson WR
BMC Bioinformatics; 2010 Mar; 11():146. PubMed ID: 20307279
[TBL] [Abstract][Full Text] [Related]
6. Statistical significance of ungapped sequence alignments.
Alexandrov NN; Solovyev VV
Pac Symp Biocomput; 1998; ():463-72. PubMed ID: 9697204
[TBL] [Abstract][Full Text] [Related]
7. Towards an automatic method of predicting protein structure by homology: an evaluation of suboptimal sequence alignments.
Saqi MA; Bates PA; Sternberg MJ
Protein Eng; 1992 Jun; 5(4):305-11. PubMed ID: 1409552
[TBL] [Abstract][Full Text] [Related]
8. Accuracy of structure-based sequence alignment of automatic methods.
Kim C; Lee B
BMC Bioinformatics; 2007 Sep; 8():355. PubMed ID: 17883866
[TBL] [Abstract][Full Text] [Related]
9. Segment-based scores for pairwise and multiple sequence alignments.
Morgenstern B; Atchley WR; Hahn K; Dress A
Proc Int Conf Intell Syst Mol Biol; 1998; 6():115-21. PubMed ID: 9783216
[TBL] [Abstract][Full Text] [Related]
10. On the reliability and the limits of inference of amino acid sequence alignments.
Rajapaksa S; Sumanaweera D; Lesk AM; Allison L; Stuckey PJ; Garcia de la Banda M; Abramson D; Konagurthu AS
Bioinformatics; 2022 Jun; 38(Suppl 1):i255-i263. PubMed ID: 35758808
[TBL] [Abstract][Full Text] [Related]
11. Stochastic pairwise alignments.
Mückstein U; Hofacker IL; Stadler PF
Bioinformatics; 2002; 18 Suppl 2():S153-60. PubMed ID: 12385998
[TBL] [Abstract][Full Text] [Related]
12. Multiple DNA and protein sequence alignment based on segment-to-segment comparison.
Morgenstern B; Dress A; Werner T
Proc Natl Acad Sci U S A; 1996 Oct; 93(22):12098-103. PubMed ID: 8901539
[TBL] [Abstract][Full Text] [Related]
13. Significant improvement in accuracy of multiple protein sequence alignments by iterative refinement as assessed by reference to structural alignments.
Gotoh O
J Mol Biol; 1996 Dec; 264(4):823-38. PubMed ID: 8980688
[TBL] [Abstract][Full Text] [Related]
14. Sequence alignments and pair hidden Markov models using evolutionary history.
Knudsen B; Miyamoto MM
J Mol Biol; 2003 Oct; 333(2):453-60. PubMed ID: 14529629
[TBL] [Abstract][Full Text] [Related]
15. Amino acid similarity matrix for homology modeling derived from structural alignment and optimized by the Monte Carlo method.
Ogata K; Ohya M; Umeyama H
J Mol Graph Model; 1998; 16(4-6):178-89, 254. PubMed ID: 10522237
[TBL] [Abstract][Full Text] [Related]
16. Positional statistical significance in sequence alignment.
Yu L; Smith TF
J Comput Biol; 1999; 6(2):253-9. PubMed ID: 10421526
[TBL] [Abstract][Full Text] [Related]
17. Improving the quality of twilight-zone alignments.
Jaroszewski L; Rychlewski L; Godzik A
Protein Sci; 2000 Aug; 9(8):1487-96. PubMed ID: 10975570
[TBL] [Abstract][Full Text] [Related]
18. Flexible sequence similarity searching with the FASTA3 program package.
Pearson WR
Methods Mol Biol; 2000; 132():185-219. PubMed ID: 10547837
[TBL] [Abstract][Full Text] [Related]
19. Predicting reliable regions in protein alignments from sequence profiles.
Tress ML; Jones D; Valencia A
J Mol Biol; 2003 Jul; 330(4):705-18. PubMed ID: 12850141
[TBL] [Abstract][Full Text] [Related]
20. Protein structure prediction improves the quality of amino-acid sequence alignment.
Lesk AM; Konagurthu AS
Proteins; 2022 Dec; 90(12):2144-2147. PubMed ID: 35754316
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
