79 related articles for article (PubMed ID: 8790465)
1. Biological evaluation of d2, an algorithm for high-performance sequence comparison.
Hide W; Burke J; Davison DB
J Comput Biol; 1994; 1(3):199-215. PubMed ID: 8790465
[TBL] [Abstract][Full Text] [Related]
2. Asymptotic behaviour and optimal word size for exact and approximate word matches between random sequences.
Forêt S; Kantorovitz MR; Burden CJ
BMC Bioinformatics; 2006 Dec; 7 Suppl 5(Suppl 5):S21. PubMed ID: 17254306
[TBL] [Abstract][Full Text] [Related]
3. A measure of DNA sequence dissimilarity based on free energy of nearest-neighbor interaction.
Zhang Y; Chen W
J Biomol Struct Dyn; 2011 Feb; 28(4):557-65. PubMed ID: 21142215
[TBL] [Abstract][Full Text] [Related]
4. Characterizing the D2 statistic: word matches in biological sequences.
Forêt S; Wilson SR; Burden CJ
Stat Appl Genet Mol Biol; 2009; 8():Article 43. PubMed ID: 19883369
[TBL] [Abstract][Full Text] [Related]
5. A RAPID algorithm for sequence database comparisons: application to the identification of vector contamination in the EMBL databases.
Miller C; Gurd J; Brass A
Bioinformatics; 1999 Feb; 15(2):111-21. PubMed ID: 10089196
[TBL] [Abstract][Full Text] [Related]
6. An efficient similarity search based on indexing in large DNA databases.
Jeong IS; Park KW; Kang SH; Lim HS
Comput Biol Chem; 2010 Apr; 34(2):131-6. PubMed ID: 20418167
[TBL] [Abstract][Full Text] [Related]
7. HBLAST: Parallelised sequence similarity--A Hadoop MapReducable basic local alignment search tool.
O'Driscoll A; Belogrudov V; Carroll J; Kropp K; Walsh P; Ghazal P; Sleator RD
J Biomed Inform; 2015 Apr; 54():58-64. PubMed ID: 25625550
[TBL] [Abstract][Full Text] [Related]
8. Incremental window-based protein sequence alignment algorithms.
Rangwala H; Karypis G
Bioinformatics; 2007 Jan; 23(2):e17-23. PubMed ID: 17237087
[TBL] [Abstract][Full Text] [Related]
9. Designing a bioengine for detection and analysis of base string on an affected sequence in high-concentration regions.
Bhattacharyya D; Mandal BK; Kim TH
Biomed Res Int; 2013; 2013():372646. PubMed ID: 24000321
[TBL] [Abstract][Full Text] [Related]
10. A symmetric-iterated multiple alignment of protein sequences.
Brocchieri L; Karlin S
J Mol Biol; 1998 Feb; 276(1):249-64. PubMed ID: 9514731
[TBL] [Abstract][Full Text] [Related]
11. Using Markov model to improve word normalization algorithm for biological sequence comparison.
Dai Q; Liu X; Yao Y; Zhao F
Amino Acids; 2012 May; 42(5):1867-77. PubMed ID: 21505825
[TBL] [Abstract][Full Text] [Related]
12. GRAT--genome-scale rapid alignment tool.
Kindlund E; Tammi MT; Arner E; Nilsson D; Andersson B
Comput Methods Programs Biomed; 2007 Apr; 86(1):87-92. PubMed ID: 17292508
[TBL] [Abstract][Full Text] [Related]
13. Provably sensitive indexing strategies for biosequence similarity search.
Buhler J
J Comput Biol; 2003; 10(3-4):399-417. PubMed ID: 13677335
[TBL] [Abstract][Full Text] [Related]
14. A measure of DNA sequence dissimilarity based on Mahalanobis distance between frequencies of words.
Wu TJ; Burke JP; Davison DB
Biometrics; 1997 Dec; 53(4):1431-9. PubMed ID: 9423258
[TBL] [Abstract][Full Text] [Related]
15. Estimating and evaluating the statistics of gapped local-alignment scores.
Bailey TL; Gribskov M
J Comput Biol; 2002; 9(3):575-93. PubMed ID: 12162893
[TBL] [Abstract][Full Text] [Related]
16. Accurate anchoring alignment of divergent sequences.
Huang W; Umbach DM; Li L
Bioinformatics; 2006 Jan; 22(1):29-34. PubMed ID: 16301203
[TBL] [Abstract][Full Text] [Related]
17. Protein structural similarity search by Ramachandran codes.
Lo WC; Huang PJ; Chang CH; Lyu PC
BMC Bioinformatics; 2007 Aug; 8():307. PubMed ID: 17716377
[TBL] [Abstract][Full Text] [Related]
18. Tsukuba BB: a branch and bound algorithm for local multiple alignment of DNA and protein sequences.
Horton P
J Comput Biol; 2001; 8(3):283-303. PubMed ID: 11535177
[TBL] [Abstract][Full Text] [Related]
19. Multiple alignment by sequence annealing.
Schwartz AS; Pachter L
Bioinformatics; 2007 Jan; 23(2):e24-9. PubMed ID: 17237099
[TBL] [Abstract][Full Text] [Related]
20. A genetic similarity algorithm for searching the Gene Ontology terms and annotating anonymous protein sequences.
Othman RM; Deris S; Illias RM
J Biomed Inform; 2008 Feb; 41(1):65-81. PubMed ID: 17681495
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
