These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

266 related articles for article (PubMed ID: 8807875)

  • 1. Hammerhead: fast, fully automated docking of flexible ligands to protein binding sites.
    Welch W; Ruppert J; Jain AN
    Chem Biol; 1996 Jun; 3(6):449-62. PubMed ID: 8807875
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Flexible ligand docking using conformational ensembles.
    Lorber DM; Shoichet BK
    Protein Sci; 1998 Apr; 7(4):938-50. PubMed ID: 9568900
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy.
    Wu Y; Brooks CL
    J Chem Inf Model; 2021 Nov; 61(11):5535-5549. PubMed ID: 34704754
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Surflex: fully automatic flexible molecular docking using a molecular similarity-based search engine.
    Jain AN
    J Med Chem; 2003 Feb; 46(4):499-511. PubMed ID: 12570372
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein flexibility in ligand docking and virtual screening to protein kinases.
    Cavasotto CN; Abagyan RA
    J Mol Biol; 2004 Mar; 337(1):209-25. PubMed ID: 15001363
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Docking and scoring with alternative side-chain conformations.
    Hartmann C; Antes I; Lengauer T
    Proteins; 2009 Feb; 74(3):712-26. PubMed ID: 18704939
    [TBL] [Abstract][Full Text] [Related]  

  • 7. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
    Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
    PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ligand-biased ensemble receptor docking (LigBEnD): a hybrid ligand/receptor structure-based approach.
    Lam PC; Abagyan R; Totrov M
    J Comput Aided Mol Des; 2018 Jan; 32(1):187-198. PubMed ID: 28887659
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparison of two implementations of the incremental construction algorithm in flexible docking of thrombin inhibitors.
    Knegtel RM; Bayada DM; Engh RA; von der Saal W; van Geerestein VJ; Grootenhuis PD
    J Comput Aided Mol Des; 1999 Mar; 13(2):167-83. PubMed ID: 10091122
    [TBL] [Abstract][Full Text] [Related]  

  • 10. A fast protein-ligand docking algorithm based on hydrogen bond matching and surface shape complementarity.
    Luo W; Pei J; Zhu Y
    J Mol Model; 2010 May; 16(5):903-13. PubMed ID: 19823881
    [TBL] [Abstract][Full Text] [Related]  

  • 11. FlexE: efficient molecular docking considering protein structure variations.
    Claussen H; Buning C; Rarey M; Lengauer T
    J Mol Biol; 2001 Apr; 308(2):377-95. PubMed ID: 11327774
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Time-efficient docking of flexible ligands into active sites of proteins.
    Rarey M; Kramer B; Lengauer T
    Proc Int Conf Intell Syst Mol Biol; 1995; 3():300-8. PubMed ID: 7584452
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Testing a flexible-receptor docking algorithm in a model binding site.
    Wei BQ; Weaver LH; Ferrari AM; Matthews BW; Shoichet BK
    J Mol Biol; 2004 Apr; 337(5):1161-82. PubMed ID: 15046985
    [TBL] [Abstract][Full Text] [Related]  

  • 14. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A critical assessment of docking programs and scoring functions.
    Warren GL; Andrews CW; Capelli AM; Clarke B; LaLonde J; Lambert MH; Lindvall M; Nevins N; Semus SF; Senger S; Tedesco G; Wall ID; Woolven JM; Peishoff CE; Head MS
    J Med Chem; 2006 Oct; 49(20):5912-31. PubMed ID: 17004707
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Development and validation of a genetic algorithm for flexible docking.
    Jones G; Willett P; Glen RC; Leach AR; Taylor R
    J Mol Biol; 1997 Apr; 267(3):727-48. PubMed ID: 9126849
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Fully automated molecular mechanics based induced fit protein-ligand docking method.
    Koska J; Spassov VZ; Maynard AJ; Yan L; Austin N; Flook PK; Venkatachalam CM
    J Chem Inf Model; 2008 Oct; 48(10):1965-73. PubMed ID: 18816046
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Soft docking and multiple receptor conformations in virtual screening.
    Ferrari AM; Wei BQ; Costantino L; Shoichet BK
    J Med Chem; 2004 Oct; 47(21):5076-84. PubMed ID: 15456251
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A method for biomolecular structural recognition and docking allowing conformational flexibility.
    Sandak B; Nussinov R; Wolfson HJ
    J Comput Biol; 1998; 5(4):631-54. PubMed ID: 10072081
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Machine learning in computational docking.
    Khamis MA; Gomaa W; Ahmed WF
    Artif Intell Med; 2015 Mar; 63(3):135-52. PubMed ID: 25724101
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.