218 related articles for article (PubMed ID: 8950278)
1. Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.
Meyer M; Wilson P; Schomburg D
J Mol Biol; 1996 Nov; 264(1):199-210. PubMed ID: 8950278
[TBL] [Abstract][Full Text] [Related]
2. Examination of shape complementarity in docking of unbound proteins.
Norel R; Petrey D; Wolfson HJ; Nussinov R
Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824
[TBL] [Abstract][Full Text] [Related]
3. PRL-Dock: protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling.
Wu MY; Dai DQ; Yan H
Proteins; 2012 Aug; 80(9):2137-53. PubMed ID: 22544808
[TBL] [Abstract][Full Text] [Related]
4. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.
Word JM; Lovell SC; LaBean TH; Taylor HC; Zalis ME; Presley BK; Richardson JS; Richardson DC
J Mol Biol; 1999 Jan; 285(4):1711-33. PubMed ID: 9917407
[TBL] [Abstract][Full Text] [Related]
5. BiGGER: a new (soft) docking algorithm for predicting protein interactions.
Palma PN; Krippahl L; Wampler JE; Moura JJ
Proteins; 2000 Jun; 39(4):372-84. PubMed ID: 10813819
[TBL] [Abstract][Full Text] [Related]
6. The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria.
Peters KP; Fauck J; Frömmel C
J Mol Biol; 1996 Feb; 256(1):201-13. PubMed ID: 8609611
[TBL] [Abstract][Full Text] [Related]
7. PUZZLE: a new method for automated protein docking based on surface shape complementarity.
Helmer-Citterich M; Tramontano A
J Mol Biol; 1994 Jan; 235(3):1021-31. PubMed ID: 7507171
[TBL] [Abstract][Full Text] [Related]
8. Complementarity of hydrophobic properties in ATP-protein binding: a new criterion to rank docking solutions.
Pyrkov TV; Kosinsky YA; Arseniev AS; Priestle JP; Jacoby E; Efremov RG
Proteins; 2007 Feb; 66(2):388-98. PubMed ID: 17094116
[TBL] [Abstract][Full Text] [Related]
9. Shape complementarity at protein-protein interfaces.
Norel R; Lin SL; Wolfson HJ; Nussinov R
Biopolymers; 1994 Jul; 34(7):933-40. PubMed ID: 8054472
[TBL] [Abstract][Full Text] [Related]
10. SuperStar: improved knowledge-based interaction fields for protein binding sites.
Verdonk ML; Cole JC; Watson P; Gillet V; Willett P
J Mol Biol; 2001 Mar; 307(3):841-59. PubMed ID: 11273705
[TBL] [Abstract][Full Text] [Related]
11. Protein-protein docking by shape-complementarity and property matching.
Geppert T; Proschak E; Schneider G
J Comput Chem; 2010 Jul; 31(9):1919-28. PubMed ID: 20087900
[TBL] [Abstract][Full Text] [Related]
12. Molecular surface complementarity at protein-protein interfaces: the critical role played by surface normals at well placed, sparse, points in docking.
Norel R; Lin SL; Wolfson HJ; Nussinov R
J Mol Biol; 1995 Sep; 252(2):263-73. PubMed ID: 7674306
[TBL] [Abstract][Full Text] [Related]
13. Flexible ligand docking: a multistep strategy approach.
Wang J; Kollman PA; Kuntz ID
Proteins; 1999 Jul; 36(1):1-19. PubMed ID: 10373002
[TBL] [Abstract][Full Text] [Related]
14. Weighted geometric docking: incorporating external information in the rotation-translation scan.
Ben-Zeev E; Eisenstein M
Proteins; 2003 Jul; 52(1):24-7. PubMed ID: 12784363
[TBL] [Abstract][Full Text] [Related]
15. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
Taylor RD; Jewsbury PJ; Essex JW
J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
[TBL] [Abstract][Full Text] [Related]
16. Hydrophobic docking: a proposed enhancement to molecular recognition techniques.
Vakser IA; Aflalo C
Proteins; 1994 Dec; 20(4):320-9. PubMed ID: 7731951
[TBL] [Abstract][Full Text] [Related]
17. Sampling geometries of protein-protein complexes.
Guerler A; Lorenzen S; Krull F; Knapp EW
Genome Inform; 2008; 20():260-9. PubMed ID: 19425140
[TBL] [Abstract][Full Text] [Related]
18. MIAX: a new paradigm for modeling biomacromolecular interactions and complex formation in condensed phases.
Del Carpio-Muñoz CA; Ichiishi E; Yoshimori A; Yoshikawa T
Proteins; 2002 Sep; 48(4):696-732. PubMed ID: 12211037
[TBL] [Abstract][Full Text] [Related]
19. Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding.
Matta CF; Bader RF
Proteins; 2003 Aug; 52(3):360-99. PubMed ID: 12866050
[TBL] [Abstract][Full Text] [Related]
20. Hydrophobic complementarity in protein-protein docking.
Berchanski A; Shapira B; Eisenstein M
Proteins; 2004 Jul; 56(1):130-42. PubMed ID: 15162493
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]