These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

214 related articles for article (PubMed ID: 8950278)

  • 1. Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.
    Meyer M; Wilson P; Schomburg D
    J Mol Biol; 1996 Nov; 264(1):199-210. PubMed ID: 8950278
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Examination of shape complementarity in docking of unbound proteins.
    Norel R; Petrey D; Wolfson HJ; Nussinov R
    Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PRL-Dock: protein-ligand docking based on hydrogen bond matching and probabilistic relaxation labeling.
    Wu MY; Dai DQ; Yan H
    Proteins; 2012 Aug; 80(9):2137-53. PubMed ID: 22544808
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.
    Word JM; Lovell SC; LaBean TH; Taylor HC; Zalis ME; Presley BK; Richardson JS; Richardson DC
    J Mol Biol; 1999 Jan; 285(4):1711-33. PubMed ID: 9917407
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BiGGER: a new (soft) docking algorithm for predicting protein interactions.
    Palma PN; Krippahl L; Wampler JE; Moura JJ
    Proteins; 2000 Jun; 39(4):372-84. PubMed ID: 10813819
    [TBL] [Abstract][Full Text] [Related]  

  • 6. The automatic search for ligand binding sites in proteins of known three-dimensional structure using only geometric criteria.
    Peters KP; Fauck J; Frömmel C
    J Mol Biol; 1996 Feb; 256(1):201-13. PubMed ID: 8609611
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PUZZLE: a new method for automated protein docking based on surface shape complementarity.
    Helmer-Citterich M; Tramontano A
    J Mol Biol; 1994 Jan; 235(3):1021-31. PubMed ID: 7507171
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Complementarity of hydrophobic properties in ATP-protein binding: a new criterion to rank docking solutions.
    Pyrkov TV; Kosinsky YA; Arseniev AS; Priestle JP; Jacoby E; Efremov RG
    Proteins; 2007 Feb; 66(2):388-98. PubMed ID: 17094116
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Shape complementarity at protein-protein interfaces.
    Norel R; Lin SL; Wolfson HJ; Nussinov R
    Biopolymers; 1994 Jul; 34(7):933-40. PubMed ID: 8054472
    [TBL] [Abstract][Full Text] [Related]  

  • 10. SuperStar: improved knowledge-based interaction fields for protein binding sites.
    Verdonk ML; Cole JC; Watson P; Gillet V; Willett P
    J Mol Biol; 2001 Mar; 307(3):841-59. PubMed ID: 11273705
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Protein-protein docking by shape-complementarity and property matching.
    Geppert T; Proschak E; Schneider G
    J Comput Chem; 2010 Jul; 31(9):1919-28. PubMed ID: 20087900
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular surface complementarity at protein-protein interfaces: the critical role played by surface normals at well placed, sparse, points in docking.
    Norel R; Lin SL; Wolfson HJ; Nussinov R
    J Mol Biol; 1995 Sep; 252(2):263-73. PubMed ID: 7674306
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Flexible ligand docking: a multistep strategy approach.
    Wang J; Kollman PA; Kuntz ID
    Proteins; 1999 Jul; 36(1):1-19. PubMed ID: 10373002
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Weighted geometric docking: incorporating external information in the rotation-translation scan.
    Ben-Zeev E; Eisenstein M
    Proteins; 2003 Jul; 52(1):24-7. PubMed ID: 12784363
    [TBL] [Abstract][Full Text] [Related]  

  • 15. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
    Taylor RD; Jewsbury PJ; Essex JW
    J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Hydrophobic docking: a proposed enhancement to molecular recognition techniques.
    Vakser IA; Aflalo C
    Proteins; 1994 Dec; 20(4):320-9. PubMed ID: 7731951
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Sampling geometries of protein-protein complexes.
    Guerler A; Lorenzen S; Krull F; Knapp EW
    Genome Inform; 2008; 20():260-9. PubMed ID: 19425140
    [TBL] [Abstract][Full Text] [Related]  

  • 18. MIAX: a new paradigm for modeling biomacromolecular interactions and complex formation in condensed phases.
    Del Carpio-Muñoz CA; Ichiishi E; Yoshimori A; Yoshikawa T
    Proteins; 2002 Sep; 48(4):696-732. PubMed ID: 12211037
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding.
    Matta CF; Bader RF
    Proteins; 2003 Aug; 52(3):360-99. PubMed ID: 12866050
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Hydrophobic complementarity in protein-protein docking.
    Berchanski A; Shapira B; Eisenstein M
    Proteins; 2004 Jul; 56(1):130-42. PubMed ID: 15162493
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 11.