119 related articles for article (PubMed ID: 8954800)
1. Sensitivity and selectivity in protein similarity searches: a comparison of Smith-Waterman in hardware to BLAST and FASTA.
Shpaer EG; Robinson M; Yee D; Candlin JD; Mines R; Hunkapiller T
Genomics; 1996 Dec; 38(2):179-91. PubMed ID: 8954800
[TBL] [Abstract][Full Text] [Related]
2. FASTA-SWAP and FASTA-PAT: pattern database searches using combinations of aligned amino acids, and a novel scoring theory.
Ladunga I; Wiese BA; Smith RF
J Mol Biol; 1996 Jun; 259(4):840-54. PubMed ID: 8683587
[TBL] [Abstract][Full Text] [Related]
3. Empirical statistical estimates for sequence similarity searches.
Pearson WR
J Mol Biol; 1998 Feb; 276(1):71-84. PubMed ID: 9514730
[TBL] [Abstract][Full Text] [Related]
4. BLAST and FASTA similarity searching for multiple sequence alignment.
Pearson WR
Methods Mol Biol; 2014; 1079():75-101. PubMed ID: 24170396
[TBL] [Abstract][Full Text] [Related]
5. Comparison of methods for searching protein sequence databases.
Pearson WR
Protein Sci; 1995 Jun; 4(6):1145-60. PubMed ID: 7549879
[TBL] [Abstract][Full Text] [Related]
6. Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).
Dowd SE; Zaragoza J; Rodriguez JR; Oliver MJ; Payton PR
BMC Bioinformatics; 2005 Apr; 6():93. PubMed ID: 15819992
[TBL] [Abstract][Full Text] [Related]
7. Database similarity searches.
Plewniak F
Methods Mol Biol; 2008; 484():361-78. PubMed ID: 18592192
[TBL] [Abstract][Full Text] [Related]
8. Performance evaluation of a new algorithm for the detection of remote homologs with sequence comparison.
Kann MG; Goldstein RA
Proteins; 2002 Aug; 48(2):367-76. PubMed ID: 12112703
[TBL] [Abstract][Full Text] [Related]
9. Fast model-based protein homology detection without alignment.
Hochreiter S; Heusel M; Obermayer K
Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
[TBL] [Abstract][Full Text] [Related]
10. PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology.
Saebø PE; Andersen SM; Myrseth J; Laerdahl JK; Rognes T
Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W535-9. PubMed ID: 15980529
[TBL] [Abstract][Full Text] [Related]
11. Further evaluation of the utility of "sliding window" FASTA in predicting cross-reactivity with allergenic proteins.
Cressman RF; Ladics G
Regul Toxicol Pharmacol; 2009 Aug; 54(3 Suppl):S20-5. PubMed ID: 19114081
[TBL] [Abstract][Full Text] [Related]
12. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
Yona G; Levitt M
J Mol Biol; 2002 Feb; 315(5):1257-75. PubMed ID: 11827492
[TBL] [Abstract][Full Text] [Related]
13. Protein structural similarity search by Ramachandran codes.
Lo WC; Huang PJ; Chang CH; Lyu PC
BMC Bioinformatics; 2007 Aug; 8():307. PubMed ID: 17716377
[TBL] [Abstract][Full Text] [Related]
14. Prediction of protein subcellular localization.
Yu CS; Chen YC; Lu CH; Hwang JK
Proteins; 2006 Aug; 64(3):643-51. PubMed ID: 16752418
[TBL] [Abstract][Full Text] [Related]
15. Speeding up tandem mass spectrometry database search: metric embeddings and fast near neighbor search.
Dutta D; Chen T
Bioinformatics; 2007 Mar; 23(5):612-8. PubMed ID: 17237061
[TBL] [Abstract][Full Text] [Related]
16. Performance evaluation of amino acid substitution matrices.
Henikoff S; Henikoff JG
Proteins; 1993 Sep; 17(1):49-61. PubMed ID: 8234244
[TBL] [Abstract][Full Text] [Related]
17. Probabilistic alignment detects remote homology in a pair of protein sequences without homologous sequence information.
Koike R; Kinoshita K; Kidera A
Proteins; 2007 Feb; 66(3):655-63. PubMed ID: 17152080
[TBL] [Abstract][Full Text] [Related]
18. Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases.
Sadygov RG; Liu H; Yates JR
Anal Chem; 2004 Mar; 76(6):1664-71. PubMed ID: 15018565
[TBL] [Abstract][Full Text] [Related]
19. Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms.
Pearson WR
Genomics; 1991 Nov; 11(3):635-50. PubMed ID: 1774068
[TBL] [Abstract][Full Text] [Related]
20. methBLAST and methPrimerDB: web-tools for PCR based methylation analysis.
Pattyn F; Hoebeeck J; Robbrecht P; Michels E; De Paepe A; Bottu G; Coornaert D; Herzog R; Speleman F; Vandesompele J
BMC Bioinformatics; 2006 Nov; 7():496. PubMed ID: 17094804
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
