213 related articles for article (PubMed ID: 9054980)
1. Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation.
Bahar I; Jernigan RL
J Mol Biol; 1997 Feb; 266(1):195-214. PubMed ID: 9054980
[TBL] [Abstract][Full Text] [Related]
2. Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.
Miyazawa S; Jernigan RL
J Mol Biol; 1996 Mar; 256(3):623-44. PubMed ID: 8604144
[TBL] [Abstract][Full Text] [Related]
3. A consistent set of statistical potentials for quantifying local side-chain and backbone interactions.
Fang Q; Shortle D
Proteins; 2005 Jul; 60(1):90-6. PubMed ID: 15852305
[TBL] [Abstract][Full Text] [Related]
4. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
5. Inter-residue and solvent-residue interactions in proteins: a statistical study on experimental structures.
Chelli R; Gervasio FL; Procacci P; Schettino V
Proteins; 2004 Apr; 55(1):139-51. PubMed ID: 14997548
[TBL] [Abstract][Full Text] [Related]
6. Empirical solvent-mediated potentials hold for both intra-molecular and inter-molecular inter-residue interactions.
Keskin O; Bahar I; Badretdinov AY; Ptitsyn OB; Jernigan RL
Protein Sci; 1998 Dec; 7(12):2578-86. PubMed ID: 9865952
[TBL] [Abstract][Full Text] [Related]
7. Inter-residue interactions in protein folding and stability.
Gromiha MM; Selvaraj S
Prog Biophys Mol Biol; 2004 Oct; 86(2):235-77. PubMed ID: 15288760
[TBL] [Abstract][Full Text] [Related]
8. Helix-helix packing and interfacial pairwise interactions of residues in membrane proteins.
Adamian L; Liang J
J Mol Biol; 2001 Aug; 311(4):891-907. PubMed ID: 11518538
[TBL] [Abstract][Full Text] [Related]
9. Evaluation of short-range interactions as secondary structure energies for protein fold and sequence recognition.
Miyazawa S; Jernigan RL
Proteins; 1999 Aug; 36(3):347-56. PubMed ID: 10409828
[TBL] [Abstract][Full Text] [Related]
10. Contact pair dynamics during folding of two small proteins: chicken villin head piece and the Alzheimer protein beta-amyloid.
Mukherjee A; Bagchi B
J Chem Phys; 2004 Jan; 120(3):1602-12. PubMed ID: 15268287
[TBL] [Abstract][Full Text] [Related]
11. Predicting protein stability changes upon mutation using database-derived potentials: solvent accessibility determines the importance of local versus non-local interactions along the sequence.
Gilis D; Rooman M
J Mol Biol; 1997 Sep; 272(2):276-90. PubMed ID: 9299354
[TBL] [Abstract][Full Text] [Related]
12. Atoms-in-molecules study of the genetically encoded amino acids. III. Bond and atomic properties and their correlations with experiment including mutation-induced changes in protein stability and genetic coding.
Matta CF; Bader RF
Proteins; 2003 Aug; 52(3):360-99. PubMed ID: 12866050
[TBL] [Abstract][Full Text] [Related]
13. Factors influencing the ability of knowledge-based potentials to identify native sequence-structure matches.
Kocher JP; Rooman MJ; Wodak SJ
J Mol Biol; 1994 Feb; 235(5):1598-613. PubMed ID: 8107094
[TBL] [Abstract][Full Text] [Related]
14. Protein contacts, inter-residue interactions and side-chain modelling.
Faure G; Bornot A; de Brevern AG
Biochimie; 2008 Apr; 90(4):626-39. PubMed ID: 18086572
[TBL] [Abstract][Full Text] [Related]
15. Stability of cyclic beta-hairpins: asymmetric contributions from side chains of a hydrogen-bonded cross-strand residue pair.
Russell SJ; Blandl T; Skelton NJ; Cochran AG
J Am Chem Soc; 2003 Jan; 125(2):388-95. PubMed ID: 12517150
[TBL] [Abstract][Full Text] [Related]
16. An analysis of side chain interactions and pair correlations within antiparallel beta-sheets: the differences between backbone hydrogen-bonded and non-hydrogen-bonded residue pairs.
Wouters MA; Curmi PM
Proteins; 1995 Jun; 22(2):119-31. PubMed ID: 7567960
[TBL] [Abstract][Full Text] [Related]
17. Local interactions in protein folding determined through an inverse folding model.
Bastolla U; Porto M; OrtÃz AR
Proteins; 2008 Apr; 71(1):278-99. PubMed ID: 17932940
[TBL] [Abstract][Full Text] [Related]
18. Close-range electrostatic interactions in proteins.
Kumar S; Nussinov R
Chembiochem; 2002 Jul; 3(7):604-17. PubMed ID: 12324994
[TBL] [Abstract][Full Text] [Related]
19. Amino acid pairing preferences in parallel beta-sheets in proteins.
Fooks HM; Martin AC; Woolfson DN; Sessions RB; Hutchinson EG
J Mol Biol; 2006 Feb; 356(1):32-44. PubMed ID: 16337654
[TBL] [Abstract][Full Text] [Related]
20. Surfactant solutions and porous substrates: spreading and imbibition.
Starov VM
Adv Colloid Interface Sci; 2004 Nov; 111(1-2):3-27. PubMed ID: 15571660
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
