206 related articles for article (PubMed ID: 9102471)
1. An automated classification of the structure of protein loops.
Oliva B; Bates PA; Querol E; Avilés FX; Sternberg MJ
J Mol Biol; 1997 Mar; 266(4):814-30. PubMed ID: 9102471
[TBL] [Abstract][Full Text] [Related]
2. Conformational analysis and clustering of short and medium size loops connecting regular secondary structures: a database for modeling and prediction.
Donate LE; Rufino SD; Canard LH; Blundell TL
Protein Sci; 1996 Dec; 5(12):2600-16. PubMed ID: 8976569
[TBL] [Abstract][Full Text] [Related]
3. Protein loops on structurally similar scaffolds: database and conformational analysis.
Li W; Liu Z; Lai L
Biopolymers; 1999 May; 49(6):481-95. PubMed ID: 10193195
[TBL] [Abstract][Full Text] [Related]
4. Prediction of the conformation and geometry of loops in globular proteins: testing ArchDB, a structural classification of loops.
Fernandez-Fuentes N; Querol E; Aviles FX; Sternberg MJ; Oliva B
Proteins; 2005 Sep; 60(4):746-57. PubMed ID: 16021623
[TBL] [Abstract][Full Text] [Related]
5. Automated classification of antibody complementarity determining region 3 of the heavy chain (H3) loops into canonical forms and its application to protein structure prediction.
Oliva B; Bates PA; Querol E; Avilés FX; Sternberg MJ
J Mol Biol; 1998 Jun; 279(5):1193-210. PubMed ID: 9642095
[TBL] [Abstract][Full Text] [Related]
6. Predicting the conformational class of short and medium size loops connecting regular secondary structures: application to comparative modelling.
Rufino SD; Donate LE; Canard LH; Blundell TL
J Mol Biol; 1997 Mar; 267(2):352-67. PubMed ID: 9096231
[TBL] [Abstract][Full Text] [Related]
7. Analysis of C alpha geometry in protein structures.
Oldfield TJ; Hubbard RE
Proteins; 1994 Apr; 18(4):324-37. PubMed ID: 8208725
[TBL] [Abstract][Full Text] [Related]
8. Clustering of protein structural fragments reveals modular building block approach of nature.
Tendulkar AV; Joshi AA; Sohoni MA; Wangikar PP
J Mol Biol; 2004 Apr; 338(3):611-29. PubMed ID: 15081817
[TBL] [Abstract][Full Text] [Related]
9. [A turning point in the knowledge of the structure-function-activity relations of elastin].
Alix AJ
J Soc Biol; 2001; 195(2):181-93. PubMed ID: 11727705
[TBL] [Abstract][Full Text] [Related]
10. New efficient statistical sequence-dependent structure prediction of short to medium-sized protein loops based on an exhaustive loop classification.
Wojcik J; Mornon JP; Chomilier J
J Mol Biol; 1999 Jun; 289(5):1469-90. PubMed ID: 10373380
[TBL] [Abstract][Full Text] [Related]
11. A global taxonomy of loops in globular proteins.
Kwasigroch JM; Chomilier J; Mornon JP
J Mol Biol; 1996 Jun; 259(4):855-72. PubMed ID: 8683588
[TBL] [Abstract][Full Text] [Related]
12. Analysis, clustering and prediction of the conformation of short and medium size loops connecting regular secondary structures.
Rufino SD; Donate LE; Canard L; Blundell TL
Pac Symp Biocomput; 1996; ():570-89. PubMed ID: 9390259
[TBL] [Abstract][Full Text] [Related]
13. Ab initio computational modeling of loops in G-protein-coupled receptors: lessons from the crystal structure of rhodopsin.
Mehler EL; Hassan SA; Kortagere S; Weinstein H
Proteins; 2006 Aug; 64(3):673-90. PubMed ID: 16729264
[TBL] [Abstract][Full Text] [Related]
14. Classification of common functional loops of kinase super-families.
Fernandez-Fuentes N; Hermoso A; Espadaler J; Querol E; Aviles FX; Oliva B
Proteins; 2004 Aug; 56(3):539-55. PubMed ID: 15229886
[TBL] [Abstract][Full Text] [Related]
15. Conformational interconversions in peptide beta-turns: analysis of turns in proteins and computational estimates of barriers.
Gunasekaran K; Gomathi L; Ramakrishnan C; Chandrasekhar J; Balaram P
J Mol Biol; 1998 Dec; 284(5):1505-16. PubMed ID: 9878367
[TBL] [Abstract][Full Text] [Related]
16. PDB-based protein loop prediction: parameters for selection and methods for optimization.
van Vlijmen HW; Karplus M
J Mol Biol; 1997 Apr; 267(4):975-1001. PubMed ID: 9135125
[TBL] [Abstract][Full Text] [Related]
17. Modulation of intrinsic phi,psi propensities of amino acids by neighbouring residues in the coil regions of protein structures: NMR analysis and dissection of a beta-hairpin peptide.
Griffiths-Jones SR; Sharman GJ; Maynard AJ; Searle MS
J Mol Biol; 1998 Dec; 284(5):1597-609. PubMed ID: 9878373
[TBL] [Abstract][Full Text] [Related]
18. The nature of the turn in omega loops of proteins.
Pal M; Dasgupta S
Proteins; 2003 Jun; 51(4):591-606. PubMed ID: 12784218
[TBL] [Abstract][Full Text] [Related]
19. The refined crystal structure of Bacillus cereus oligo-1,6-glucosidase at 2.0 A resolution: structural characterization of proline-substitution sites for protein thermostabilization.
Watanabe K; Hata Y; Kizaki H; Katsube Y; Suzuki Y
J Mol Biol; 1997 May; 269(1):142-53. PubMed ID: 9193006
[TBL] [Abstract][Full Text] [Related]
20. Modeling protein loops using a phi i + 1, psi i dimer database.
Sudarsanam S; DuBose RF; March CJ; Srinivasan S
Protein Sci; 1995 Jul; 4(7):1412-20. PubMed ID: 7670382
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]