211 related articles for article (PubMed ID: 9126841)
21. Sequence elements responsible for DNA curvature.
Haran TE; Kahn JD; Crothers DM
J Mol Biol; 1994 Nov; 244(2):135-43. PubMed ID: 7966325
[TBL] [Abstract][Full Text] [Related]
22. Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA.
el Hassan MA; Calladine CR
J Mol Biol; 1996 May; 259(1):95-103. PubMed ID: 8648652
[TBL] [Abstract][Full Text] [Related]
23. Solution conformation of a bizelesin A-tract duplex adduct: DNA-DNA cross-linking of an A-tract straightens out bent DNA.
Thompson AS; Hurley LH
J Mol Biol; 1995 Sep; 252(1):86-101. PubMed ID: 7666436
[TBL] [Abstract][Full Text] [Related]
24. Sequence-dependent DNA structure: the role of the sugar-phosphate backbone.
Packer MJ; Hunter CA
J Mol Biol; 1998 Jul; 280(3):407-20. PubMed ID: 9665845
[TBL] [Abstract][Full Text] [Related]
25. Stabilization energies of the hydrogen-bonded and stacked structures of nucleic acid base pairs in the crystal geometries of CG, AT, and AC DNA steps and in the NMR geometry of the 5'-d(GCGAAGC)-3' hairpin: Complete basis set calculations at the MP2 and CCSD(T) levels.
Dabkowska I; Gonzalez HV; Jurecka P; Hobza P
J Phys Chem A; 2005 Feb; 109(6):1131-6. PubMed ID: 16833422
[TBL] [Abstract][Full Text] [Related]
26. Fingerprints of bonding motifs in DNA duplexes of adenine and thymine revealed from circular dichroism: synchrotron radiation experiments and TDDFT calculations.
Munksgaard Nielsen L; Holm AI; Varsano D; Kadhane U; Hoffmann SV; Di Felice R; Rubio A; Brøndsted Nielsen S
J Phys Chem B; 2009 Jul; 113(28):9614-9. PubMed ID: 19537699
[TBL] [Abstract][Full Text] [Related]
27. DNA base-stacking interactions: a comparison of theoretical calculations with oligonucleotide X-ray crystal structures.
Hunter CA; Lu XJ
J Mol Biol; 1997 Feb; 265(5):603-19. PubMed ID: 9048952
[TBL] [Abstract][Full Text] [Related]
28. Hydration and recognition of methylated CpG steps in DNA.
Mayer-Jung C; Moras D; Timsit Y
EMBO J; 1998 May; 17(9):2709-18. PubMed ID: 9564052
[TBL] [Abstract][Full Text] [Related]
29. A-tract polarity dominate the curvature in flanking sequences.
Merling A; Sagaydakova N; Haran TE
Biochemistry; 2003 May; 42(17):4978-84. PubMed ID: 12718540
[TBL] [Abstract][Full Text] [Related]
30. Structure of the B-DNA oligomers d(CGCTAGCG) and d(CGCTCTAGAGCG) in new crystal forms.
Tereshko V; UrpĂ L; Malinina L; Huynh-Dinh T; Subirana JA
Biochemistry; 1996 Sep; 35(36):11589-95. PubMed ID: 8794738
[TBL] [Abstract][Full Text] [Related]
31. Structure of the hydration shells of oligo(dA-dT).oligo(dA-dT) and oligo(dA).oligo(dT) tracts in B-type conformation on the basis of Monte Carlo calculations.
Eisenhaber F; Tumanyan VG; Abagyan RA
Biopolymers; 1990; 30(5-6):563-81. PubMed ID: 2265229
[TBL] [Abstract][Full Text] [Related]
32. Effects of diaminopurine and inosine substitutions on A-tract induced DNA curvature. Importance of the 3'-A-tract junction.
Mollegaard NE; Bailly C; Waring MJ; Nielsen PE
Nucleic Acids Res; 1997 Sep; 25(17):3497-502. PubMed ID: 9254710
[TBL] [Abstract][Full Text] [Related]
33. Comparative bending dynamics in DNA with and without regularly repeated adenine tracts.
Mazur AK; Kamashev DE
Phys Rev E Stat Nonlin Soft Matter Phys; 2002 Jul; 66(1 Pt 1):011917. PubMed ID: 12241394
[TBL] [Abstract][Full Text] [Related]
34. A refined prediction method for gel retardation of DNA oligonucleotides from dinucleotide step parameters: reconciliation of DNA bending models with crystal structure data.
Liu Y; Beveridge DL
J Biomol Struct Dyn; 2001 Feb; 18(4):505-26. PubMed ID: 11245247
[TBL] [Abstract][Full Text] [Related]
35. Structural origins of adenine-tract bending.
Barbic A; Zimmer DP; Crothers DM
Proc Natl Acad Sci U S A; 2003 Mar; 100(5):2369-73. PubMed ID: 12586860
[TBL] [Abstract][Full Text] [Related]
36. Solution structure of an A-tract DNA bend.
MacDonald D; Herbert K; Zhang X; Pologruto T; Lu P
J Mol Biol; 2001 Mar; 306(5):1081-98. PubMed ID: 11237619
[TBL] [Abstract][Full Text] [Related]
37. Three-centre C-H---O hydrogen bonds in the DNA minor groove: analysis of oligonucleotide crystal structures.
Ghosh A; Bansal M
Acta Crystallogr D Biol Crystallogr; 1999 Dec; 55(Pt 12):2005-12. PubMed ID: 10666576
[TBL] [Abstract][Full Text] [Related]
38. Calibration of DNA curvature and a unified description of sequence-directed bending.
Koo HS; Crothers DM
Proc Natl Acad Sci U S A; 1988 Mar; 85(6):1763-7. PubMed ID: 3162306
[TBL] [Abstract][Full Text] [Related]
39. Comparative analysis of inosine-substituted duplex DNA by circular dichroism and X-ray crystallography.
Peters JP; Kowal EA; Pallan PS; Egli M; Maher LJ
J Biomol Struct Dyn; 2018 Aug; 36(11):2753-2772. PubMed ID: 28818035
[TBL] [Abstract][Full Text] [Related]
40. Hydration of the DNA bases is local.
Schneider B; Berman HM
Biophys J; 1995 Dec; 69(6):2661-9. PubMed ID: 8599672
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]