These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

174 related articles for article (PubMed ID: 9168016)

  • 1. Effect of periodic box size on aqueous molecular dynamics simulation of a DNA dodecamer with particle-mesh Ewald method.
    de Souza ON; Ornstein RL
    Biophys J; 1997 Jun; 72(6):2395-7. PubMed ID: 9168016
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Effect of warmup protocol and sampling time on convergence of molecular dynamics simulations of a DNA dodecamer using AMBER 4.1 and particle-mesh Ewald method.
    Norberto de Souza O; Ornstein RL
    J Biomol Struct Dyn; 1997 Apr; 14(5):607-11. PubMed ID: 9130082
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Molecular dynamics simulations of solvated yeast tRNA(Asp).
    Auffinger P; Louise-May S; Westhof E
    Biophys J; 1999 Jan; 76(1 Pt 1):50-64. PubMed ID: 9876122
    [TBL] [Abstract][Full Text] [Related]  

  • 4. On the truncation of long-range electrostatic interactions in DNA.
    Norberg J; Nilsson L
    Biophys J; 2000 Sep; 79(3):1537-53. PubMed ID: 10969015
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Sequence-dependent dynamics of TATA-Box binding sites.
    Flatters D; Lavery R
    Biophys J; 1998 Jul; 75(1):372-81. PubMed ID: 9649394
    [TBL] [Abstract][Full Text] [Related]  

  • 6. DNA polymorphism: a comparison of force fields for nucleic acids.
    Reddy SY; Leclerc F; Karplus M
    Biophys J; 2003 Mar; 84(3):1421-49. PubMed ID: 12609851
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Restrained molecular dynamics of solvated duplex DNA using the particle mesh Ewald method.
    Konerding DE; Cheatham TE; Kollman PA; James TL
    J Biomol NMR; 1999 Feb; 13(2):119-31. PubMed ID: 10070753
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Sequence-dependent elastic properties of DNA.
    Lankas F; Sponer J; Hobza P; Langowski J
    J Mol Biol; 2000 Jun; 299(3):695-709. PubMed ID: 10835278
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Importance of explicit salt ions for protein stability in molecular dynamics simulation.
    Ibragimova GT; Wade RC
    Biophys J; 1998 Jun; 74(6):2906-11. PubMed ID: 9635744
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DNA structure: what's in charge?
    McConnell KJ; Beveridge DL
    J Mol Biol; 2000 Dec; 304(5):803-20. PubMed ID: 11124028
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Molecular dynamics simulations of a protein-protein dimer: particle-mesh Ewald electrostatic model yields far superior results to standard cutoff model.
    Norberto de Souza O; Ornstein RL
    J Biomol Struct Dyn; 1999 Jun; 16(6):1205-18. PubMed ID: 10447204
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Solution structure of the dodecamer d-(CATGGGCC-CATG)2 is B-DNA. Experimental and molecular dynamics study.
    Dornberger U; Spackovj N; Walter A; Gollmick FA; Sponer J; Fritzsche H
    J Biomol Struct Dyn; 2001 Aug; 19(1):159-74. PubMed ID: 11565847
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Molecular dynamics simulations of biomolecules: long-range electrostatic effects.
    Sagui C; Darden TA
    Annu Rev Biophys Biomol Struct; 1999; 28():155-79. PubMed ID: 10410799
    [TBL] [Abstract][Full Text] [Related]  

  • 14. NMR structure refinement and dynamics of the K+-[d(G3T4G3)]2 quadruplex via particle mesh Ewald molecular dynamics simulations.
    Strahan GD; Keniry MA; Shafer RH
    Biophys J; 1998 Aug; 75(2):968-81. PubMed ID: 9675197
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
    McConnell KJ; Beveridge DL
    J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Water-mediated interactions between DNA and PhoB DNA-binding/transactivation domain: NMR-restrained molecular dynamics in explicit water environment.
    Yamane T; Okamura H; Ikeguchi M; Nishimura Y; Kidera A
    Proteins; 2008 Jun; 71(4):1970-83. PubMed ID: 18186481
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Diffusion of solvent around biomolecular solutes: a molecular dynamics simulation study.
    Makarov VA; Feig M; Andrews BK; Pettitt BM
    Biophys J; 1998 Jul; 75(1):150-8. PubMed ID: 9649375
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cutoff size need not strongly influence molecular dynamics results for solvated polypeptides.
    Beck DA; Armen RS; Daggett V
    Biochemistry; 2005 Jan; 44(2):609-16. PubMed ID: 15641786
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Triplex hydration: nanosecond molecular dynamics simulation of the solvated triplex formed by mixed sequences.
    Ojha RP; Tiwari RK
    Nucleic Acids Res; 2003 Nov; 31(21):6373-80. PubMed ID: 14576325
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural equilibrium of DNA represented with different force fields.
    Feig M; Pettitt BM
    Biophys J; 1998 Jul; 75(1):134-49. PubMed ID: 9649374
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.