BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

26649 related articles for article (PubMed ID: 9254694)

  • 1. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Altschul SF; Madden TL; Schäffer AA; Zhang J; Zhang Z; Miller W; Lipman DJ
    Nucleic Acids Res; 1997 Sep; 25(17):3389-402. PubMed ID: 9254694
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Large-scale comparison of protein sequence alignment algorithms with structure alignments.
    Sauder JM; Arthur JW; Dunbrack RL
    Proteins; 2000 Jul; 40(1):6-22. PubMed ID: 10813826
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
    Wallqvist A; Fukunishi Y; Murphy LR; Fadel A; Levy RM
    Bioinformatics; 2000 Nov; 16(11):988-1002. PubMed ID: 11159310
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Using CLUSTAL for multiple sequence alignments.
    Higgins DG; Thompson JD; Gibson TJ
    Methods Enzymol; 1996; 266():383-402. PubMed ID: 8743695
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Getting the most from PSI-BLAST.
    Jones DT; Swindells MB
    Trends Biochem Sci; 2002 Mar; 27(3):161-4. PubMed ID: 11893514
    [TBL] [Abstract][Full Text] [Related]  

  • 6. IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices.
    Schäffer AA; Wolf YI; Ponting CP; Koonin EV; Aravind L; Altschul SF
    Bioinformatics; 1999 Dec; 15(12):1000-11. PubMed ID: 10745990
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PSIBLAST_PairwiseStatSig: reordering PSI-BLAST hits using pairwise statistical significance.
    Agrawal A; Huang X
    Bioinformatics; 2009 Apr; 25(8):1082-3. PubMed ID: 19251771
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Comparative modeling of CASP3 targets using PSI-BLAST and SCWRL.
    Dunbrack RL
    Proteins; 1999; Suppl 3():81-7. PubMed ID: 10526356
    [TBL] [Abstract][Full Text] [Related]  

  • 9. SALSA: improved protein database searching by a new algorithm for assembly of sequence fragments into gapped alignments.
    Rognes T; Seeberg E
    Bioinformatics; 1998; 14(10):839-45. PubMed ID: 9927712
    [TBL] [Abstract][Full Text] [Related]  

  • 10. FastBLAST: homology relationships for millions of proteins.
    Price MN; Dehal PS; Arkin AP
    PLoS One; 2008; 3(10):e3589. PubMed ID: 18974889
    [TBL] [Abstract][Full Text] [Related]  

  • 11. PHOG-BLAST--a new generation tool for fast similarity search of protein families.
    Merkeev IV; Mironov AA
    BMC Evol Biol; 2006 Jun; 6():51. PubMed ID: 16792802
    [TBL] [Abstract][Full Text] [Related]  

  • 12. ParAlign: a parallel sequence alignment algorithm for rapid and sensitive database searches.
    Rognes T
    Nucleic Acids Res; 2001 Apr; 29(7):1647-52. PubMed ID: 11266569
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Within the twilight zone: a sensitive profile-profile comparison tool based on information theory.
    Yona G; Levitt M
    J Mol Biol; 2002 Feb; 315(5):1257-75. PubMed ID: 11827492
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Recent Hits Acquired by BLAST (ReHAB): a tool to identify new hits in sequence similarity searches.
    Whitney J; Esteban DJ; Upton C
    BMC Bioinformatics; 2005 Feb; 6():23. PubMed ID: 15701178
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Powerful fusion: PSI-BLAST and consensus sequences.
    Przybylski D; Rost B
    Bioinformatics; 2008 Sep; 24(18):1987-93. PubMed ID: 18678588
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Improved gapped alignment in BLAST.
    Cameron M; Williams HE; Cannane A
    IEEE/ACM Trans Comput Biol Bioinform; 2004; 1(3):116-29. PubMed ID: 17048387
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Detection of homologous proteins by an intermediate sequence search.
    John B; Sali A
    Protein Sci; 2004 Jan; 13(1):54-62. PubMed ID: 14691221
    [TBL] [Abstract][Full Text] [Related]  

  • 18. SSMAL: similarity searching with alignment graphs.
    Nicodème P
    Bioinformatics; 1998; 14(6):508-15. PubMed ID: 9694989
    [TBL] [Abstract][Full Text] [Related]  

  • 19. The BLAST algorithms: practical application in molecular cloning, marker-assisted selection (MAS) and introgression of wheat.
    Hernández P; Martín A; Dorado G
    DNA Seq; 2000; 11(3-4):339-47. PubMed ID: 11092750
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements.
    Schäffer AA; Aravind L; Madden TL; Shavirin S; Spouge JL; Wolf YI; Koonin EV; Altschul SF
    Nucleic Acids Res; 2001 Jul; 29(14):2994-3005. PubMed ID: 11452024
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 1333.