BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

109 related articles for article (PubMed ID: 9283974)

  • 1. Atomic solvation parameters for proteins in a membrane environment. Application to transmembrane alpha-helices.
    Nolde DE; Arseniev AS; Vergoten G; Efremov RG
    J Biomol Struct Dyn; 1997 Aug; 15(1):1-18. PubMed ID: 9283974
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A solvent model for simulations of peptides in bilayers. I. Membrane-promoting alpha-helix formation.
    Efremov RG; Nolde DE; Vergoten G; Arseniev AS
    Biophys J; 1999 May; 76(5):2448-59. PubMed ID: 10233062
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A solvent model for simulations of peptides in bilayers. II. Membrane-spanning alpha-helices.
    Efremov RG; Nolde DE; Vergoten G; Arseniev AS
    Biophys J; 1999 May; 76(5):2460-71. PubMed ID: 10233063
    [TBL] [Abstract][Full Text] [Related]  

  • 4. [Modeling of peptides and proteins in membrane environment. I. A solvation model mimicking a lipid bilayer].
    Nol'de DE; Volynskiĭ PE; Arsen'ev AS; Efremov RG
    Bioorg Khim; 2000 Feb; 26(2):130-40. PubMed ID: 10808409
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Effective energy function for proteins in lipid membranes.
    Lazaridis T
    Proteins; 2003 Aug; 52(2):176-92. PubMed ID: 12833542
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Free energy determinants of secondary structure formation: I. alpha-Helices.
    Yang AS; Honig B
    J Mol Biol; 1995 Sep; 252(3):351-65. PubMed ID: 7563056
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Insertion of peptide chains into lipid membranes: an off-lattice Monte Carlo dynamics model.
    Milik M; Skolnick J
    Proteins; 1993 Jan; 15(1):10-25. PubMed ID: 8451235
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
    Avbelj F
    J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A generalized Born formalism for heterogeneous dielectric environments: application to the implicit modeling of biological membranes.
    Tanizaki S; Feig M
    J Chem Phys; 2005 Mar; 122(12):124706. PubMed ID: 15836408
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Free energy surfaces of beta-hairpin and alpha-helical peptides generated by replica exchange molecular dynamics with the AGBNP implicit solvent model.
    Felts AK; Harano Y; Gallicchio E; Levy RM
    Proteins; 2004 Aug; 56(2):310-21. PubMed ID: 15211514
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Solvation energies of amino acid side chains and backbone in a family of host-guest pentapeptides.
    Wimley WC; Creamer TP; White SH
    Biochemistry; 1996 Apr; 35(16):5109-24. PubMed ID: 8611495
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials.
    Hassan SA; Mehler EL; Zhang D; Weinstein H
    Proteins; 2003 Apr; 51(1):109-25. PubMed ID: 12596268
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Molecular dynamics study of the solvation of an alpha-helical transmembrane peptide by DMSO.
    Duarte AM; van Mierlo CP; Hemminga MA
    J Phys Chem B; 2008 Jul; 112(29):8664-71. PubMed ID: 18582096
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Influence of the environment in the conformation of alpha-helices studied by protein database search and molecular dynamics simulations.
    Olivella M; Deupi X; Govaerts C; Pardo L
    Biophys J; 2002 Jun; 82(6):3207-13. PubMed ID: 12023245
    [TBL] [Abstract][Full Text] [Related]  

  • 15. FACTS: Fast analytical continuum treatment of solvation.
    Haberthür U; Caflisch A
    J Comput Chem; 2008 Apr; 29(5):701-15. PubMed ID: 17918282
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Membrane-bound structure and energetics of alpha-synuclein.
    Mihajlovic M; Lazaridis T
    Proteins; 2008 Feb; 70(3):761-78. PubMed ID: 17729279
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Characterization of proline-containing alpha-helix (helix F model of bacteriorhodopsin) by molecular dynamics studies.
    Sankararamakrishnan R; Vishveshwara S
    Proteins; 1993 Jan; 15(1):26-41. PubMed ID: 8451238
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A combined pulse EPR and Monte Carlo simulation study provides molecular insight on peptide-membrane interactions.
    Gordon-Grossman M; Gofman Y; Zimmermann H; Frydman V; Shai Y; Ben-Tal N; Goldfarb D
    J Phys Chem B; 2009 Sep; 113(38):12687-95. PubMed ID: 19725508
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Infrared and vibrational CD spectra of partially solvated alpha-helices: DFT-based simulations with explicit solvent.
    Turner DR; Kubelka J
    J Phys Chem B; 2007 Feb; 111(7):1834-45. PubMed ID: 17256894
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Energetics and stability of transmembrane helix packing: a replica-exchange simulation with a knowledge-based membrane potential.
    Chen Z; Xu Y
    Proteins; 2006 Feb; 62(2):539-52. PubMed ID: 16299775
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.