These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
228 related articles for article (PubMed ID: 9322025)
1. Finding common sequence and structure motifs in a set of RNA sequences. Gorodkin J; Heyer LJ; Stormo GD Proc Int Conf Intell Syst Mol Biol; 1997; 5():120-3. PubMed ID: 9322025 [TBL] [Abstract][Full Text] [Related]
2. Finding the most significant common sequence and structure motifs in a set of RNA sequences. Gorodkin J; Heyer LJ; Stormo GD Nucleic Acids Res; 1997 Sep; 25(18):3724-32. PubMed ID: 9278497 [TBL] [Abstract][Full Text] [Related]
4. RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment. Xu X; Ji Y; Stormo GD Bioinformatics; 2007 Aug; 23(15):1883-91. PubMed ID: 17537756 [TBL] [Abstract][Full Text] [Related]
5. Murlet: a practical multiple alignment tool for structural RNA sequences. Kiryu H; Tabei Y; Kin T; Asai K Bioinformatics; 2007 Jul; 23(13):1588-98. PubMed ID: 17459961 [TBL] [Abstract][Full Text] [Related]
6. The FOLDALIGN web server for pairwise structural RNA alignment and mutual motif search. Havgaard JH; Lyngsø RB; Gorodkin J Nucleic Acids Res; 2005 Jul; 33(Web Server issue):W650-3. PubMed ID: 15980555 [TBL] [Abstract][Full Text] [Related]
7. RNA structural alignments, part II: non-Sankoff approaches for structural alignments. Asai K; Hamada M Methods Mol Biol; 2014; 1097():291-301. PubMed ID: 24639165 [TBL] [Abstract][Full Text] [Related]
8. A graph theoretical approach for predicting common RNA secondary structure motifs including pseudoknots in unaligned sequences. Ji Y; Xu X; Stormo GD Bioinformatics; 2004 Jul; 20(10):1591-602. PubMed ID: 14962926 [TBL] [Abstract][Full Text] [Related]
9. STRAL: progressive alignment of non-coding RNA using base pairing probability vectors in quadratic time. Dalli D; Wilm A; Mainz I; Steger G Bioinformatics; 2006 Jul; 22(13):1593-9. PubMed ID: 16613908 [TBL] [Abstract][Full Text] [Related]
11. Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction. Reeder J; Giegerich R Bioinformatics; 2005 Sep; 21(17):3516-23. PubMed ID: 16020472 [TBL] [Abstract][Full Text] [Related]
12. A memory efficient method for structure-based RNA multiple alignment. DeBlasio D; Bruand J; Zhang S IEEE/ACM Trans Comput Biol Bioinform; 2012; 9(1):1-11. PubMed ID: 21576754 [TBL] [Abstract][Full Text] [Related]
13. Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. Gautheret D; Lambert A J Mol Biol; 2001 Nov; 313(5):1003-11. PubMed ID: 11700055 [TBL] [Abstract][Full Text] [Related]
14. Automated alignment of RNA sequences to pseudoknotted structures. Tabaska JE; Stormo GD Proc Int Conf Intell Syst Mol Biol; 1997; 5():311-8. PubMed ID: 9322055 [TBL] [Abstract][Full Text] [Related]
15. RNAlign program: alignment of RNA sequences using both primary and secondary structures. Corpet F; Michot B Comput Appl Biosci; 1994 Jul; 10(4):389-99. PubMed ID: 7528630 [TBL] [Abstract][Full Text] [Related]
16. Can Clustal-style progressive pairwise alignment of multiple sequences be used in RNA secondary structure prediction? Bellamy-Royds AB; Turcotte M BMC Bioinformatics; 2007 Jun; 8():190. PubMed ID: 17559658 [TBL] [Abstract][Full Text] [Related]
17. Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints. Dowell RD; Eddy SR BMC Bioinformatics; 2006 Sep; 7():400. PubMed ID: 16952317 [TBL] [Abstract][Full Text] [Related]