These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

125 related articles for article (PubMed ID: 9390240)

  • 1. Assessing the performance of fold recognition methods by means of a comprehensive benchmark.
    Fischer D; Elofsson A; Rice D; Eisenberg D
    Pac Symp Biocomput; 1996; ():300-18. PubMed ID: 9390240
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A 3D-1D substitution matrix for protein fold recognition that includes predicted secondary structure of the sequence.
    Rice DW; Eisenberg D
    J Mol Biol; 1997 Apr; 267(4):1026-38. PubMed ID: 9135128
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Structure-based evaluation of sequence comparison and fold recognition alignment accuracy.
    Domingues FS; Lackner P; Andreeva A; Sippl MJ
    J Mol Biol; 2000 Apr; 297(4):1003-13. PubMed ID: 10736233
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Do aligned sequences share the same fold?
    Abagyan RA; Batalov S
    J Mol Biol; 1997 Oct; 273(1):355-68. PubMed ID: 9367768
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Protein fold recognition using sequence-derived predictions.
    Fischer D; Eisenberg D
    Protein Sci; 1996 May; 5(5):947-55. PubMed ID: 8732766
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Hidden Markov models that use predicted secondary structures for fold recognition.
    Hargbo J; Elofsson A
    Proteins; 1999 Jul; 36(1):68-76. PubMed ID: 10373007
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Protein fold recognition by prediction-based threading.
    Rost B; Schneider R; Sander C
    J Mol Biol; 1997 Jul; 270(3):471-80. PubMed ID: 9237912
    [TBL] [Abstract][Full Text] [Related]  

  • 8. An integrated approach to the analysis and modeling of protein sequences and structures. III. A comparative study of sequence conservation in protein structural families using multiple structural alignments.
    Yang AS; Honig B
    J Mol Biol; 2000 Aug; 301(3):691-711. PubMed ID: 10966778
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Multiple sequence threading: an analysis of alignment quality and stability.
    Taylor WR
    J Mol Biol; 1997 Jun; 269(5):902-43. PubMed ID: 9223650
    [TBL] [Abstract][Full Text] [Related]  

  • 10. DPANN: improved sequence to structure alignments following fold recognition.
    Reinhardt A; Eisenberg D
    Proteins; 2004 Aug; 56(3):528-38. PubMed ID: 15229885
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Using the radial distributions of physical features to compare amino acid environments and align amino acid sequences.
    Wei L; Altman RB; Chang JT
    Pac Symp Biocomput; 1997; ():465-76. PubMed ID: 9390315
    [TBL] [Abstract][Full Text] [Related]  

  • 12. BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark.
    Thompson JD; Koehl P; Ripp R; Poch O
    Proteins; 2005 Oct; 61(1):127-36. PubMed ID: 16044462
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A machine learning information retrieval approach to protein fold recognition.
    Cheng J; Baldi P
    Bioinformatics; 2006 Jun; 22(12):1456-63. PubMed ID: 16547073
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Protein structure mining using a structural alphabet.
    Tyagi M; de Brevern AG; Srinivasan N; Offmann B
    Proteins; 2008 May; 71(2):920-37. PubMed ID: 18004784
    [TBL] [Abstract][Full Text] [Related]  

  • 15. FROST: a filter-based fold recognition method.
    Marin A; Pothier J; Zimmermann K; Gibrat JF
    Proteins; 2002 Dec; 49(4):493-509. PubMed ID: 12402359
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Fast protein fold recognition via sequence to structure alignment and contact capacity potentials.
    Alexandrov NN; Nussinov R; Zimmer RM
    Pac Symp Biocomput; 1996; ():53-72. PubMed ID: 9390223
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comparison of the efficiency of evolutionary change-based and side chain orientation-based fold recognition potentials.
    Vishnepolsky B; Managadze G; Pirtskhalava M
    Proteins; 2008 Jun; 71(4):1863-78. PubMed ID: 18175309
    [TBL] [Abstract][Full Text] [Related]  

  • 18. CAB-Align: A Flexible Protein Structure Alignment Method Based on the Residue-Residue Contact Area.
    Terashi G; Takeda-Shitaka M
    PLoS One; 2015; 10(10):e0141440. PubMed ID: 26502070
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences.
    Tan YH; Huang H; Kihara D
    Proteins; 2006 Aug; 64(3):587-600. PubMed ID: 16799934
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Fold recognition by concurrent use of solvent accessibility and residue depth.
    Liu S; Zhang C; Liang S; Zhou Y
    Proteins; 2007 Aug; 68(3):636-45. PubMed ID: 17510969
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.