BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

116 related articles for article (PubMed ID: 9390285)

  • 1. Theoretical and algorithmical optimization of the dead-end elimination theorem.
    Desmet J; De Maeyer M; Lasters I
    Pac Symp Biocomput; 1997; ():122-33. PubMed ID: 9390285
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization.
    Desmet J; Spriet J; Lasters I
    Proteins; 2002 Jul; 48(1):31-43. PubMed ID: 12012335
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Improved Pruning algorithms and Divide-and-Conquer strategies for Dead-End Elimination, with application to protein design.
    Georgiev I; Lilien RH; Donald BR
    Bioinformatics; 2006 Jul; 22(14):e174-83. PubMed ID: 16873469
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dramatic performance enhancements for the FASTER optimization algorithm.
    Allen BD; Mayo SL
    J Comput Chem; 2006 Jul; 27(10):1071-5. PubMed ID: 16685715
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem.
    Lasters I; Desmet J
    Protein Eng; 1993 Sep; 6(7):717-22. PubMed ID: 8248095
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Dead-end elimination with backbone flexibility.
    Georgiev I; Donald BR
    Bioinformatics; 2007 Jul; 23(13):i185-94. PubMed ID: 17646295
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Finding the global minimum: a fuzzy end elimination implementation.
    Keller DA; Shibata M; Marcus E; Ornstein RL; Rein R
    Protein Eng; 1995 Sep; 8(9):893-904. PubMed ID: 8746727
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Dead-end elimination for multistate protein design.
    Yanover C; Fromer M; Shifman JM
    J Comput Chem; 2007 Oct; 28(13):2122-9. PubMed ID: 17471460
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Enhanced dead-end elimination in the search for the global minimum energy conformation of a collection of protein side chains.
    Lasters I; De Maeyer M; Desmet J
    Protein Eng; 1995 Aug; 8(8):815-22. PubMed ID: 8637851
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The dead-end elimination theorem: mathematical aspects, implementation, optimizations, evaluation, and performance.
    De Maeyer M; Desmet J; Lasters I
    Methods Mol Biol; 2000; 143():265-304. PubMed ID: 11084910
    [No Abstract]   [Full Text] [Related]  

  • 11. Exploring the conformational space of protein side chains using dead-end elimination and the A* algorithm.
    Leach AR; Lemon AP
    Proteins; 1998 Nov; 33(2):227-39. PubMed ID: 9779790
    [TBL] [Abstract][Full Text] [Related]  

  • 12. IRECS: a new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.
    Hartmann C; Antes I; Lengauer T
    Protein Sci; 2007 Jul; 16(7):1294-307. PubMed ID: 17567749
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The dead-end elimination theorem and its use in protein side-chain positioning.
    Desmet J; De Maeyer M; Hazes B; Lasters I
    Nature; 1992 Apr; 356(6369):539-42. PubMed ID: 21488406
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Exact rotamer optimization for protein design.
    Gordon DB; Hom GK; Mayo SL; Pierce NA
    J Comput Chem; 2003 Jan; 24(2):232-43. PubMed ID: 12497602
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Determinants of protein side-chain packing.
    Tanimura R; Kidera A; Nakamura H
    Protein Sci; 1994 Dec; 3(12):2358-65. PubMed ID: 7756990
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computational protein design with side-chain conformational entropy.
    Sciretti D; Bruscolini P; Pelizzola A; Pretti M; Jaramillo A
    Proteins; 2009 Jan; 74(1):176-91. PubMed ID: 18618711
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Methods for accurate homology modeling by global optimization.
    Joo K; Lee J; Lee J
    Methods Mol Biol; 2012; 857():175-88. PubMed ID: 22323221
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Protein design for diversity of sequences and conformations using dead-end elimination.
    Hanf KJ
    Methods Mol Biol; 2012; 899():127-44. PubMed ID: 22735950
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Restricted dead-end elimination: protein redesign with a bounded number of residue mutations.
    Safi M; Lilien RH
    J Comput Chem; 2010 Apr; 31(6):1207-15. PubMed ID: 19885869
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Efficient rotamer elimination applied to protein side-chains and related spin glasses.
    Goldstein RF
    Biophys J; 1994 May; 66(5):1335-40. PubMed ID: 8061189
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.