BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

287 related articles for article (PubMed ID: 9501494)

  • 21. A rapid heuristic algorithm for finding minimum evolution trees.
    Rodin A; Li WH
    Mol Phylogenet Evol; 2000 Aug; 16(2):173-9. PubMed ID: 10942605
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Improving the efficiency of SPR moves in phylogenetic tree search methods based on maximum likelihood.
    Hordijk W; Gascuel O
    Bioinformatics; 2005 Dec; 21(24):4338-47. PubMed ID: 16234323
    [TBL] [Abstract][Full Text] [Related]  

  • 23. Upper bounds on maximum likelihood for phylogenetic trees.
    Hendy MD; Holland BR
    Bioinformatics; 2003 Oct; 19 Suppl 2():ii66-72. PubMed ID: 14534174
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Column sorting: rapid calculation of the phylogenetic likelihood function.
    Kosakovsky Pond SL; Muse SV
    Syst Biol; 2004 Oct; 53(5):685-92. PubMed ID: 15545249
    [TBL] [Abstract][Full Text] [Related]  

  • 25. RAxML-III: a fast program for maximum likelihood-based inference of large phylogenetic trees.
    Stamatakis A; Ludwig T; Meier H
    Bioinformatics; 2005 Feb; 21(4):456-63. PubMed ID: 15608047
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A maximum pseudo-likelihood approach for phylogenetic networks.
    Yu Y; Nakhleh L
    BMC Genomics; 2015; 16 Suppl 10(Suppl 10):S10. PubMed ID: 26450642
    [TBL] [Abstract][Full Text] [Related]  

  • 27. Efficiencies of different genes and different tree-building methods in recovering a known vertebrate phylogeny.
    Russo CA; Takezaki N; Nei M
    Mol Biol Evol; 1996 Mar; 13(3):525-36. PubMed ID: 8742641
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Improved parameterized complexity of the maximum agreement subtree and maximum compatible tree problems.
    Berry V; Nicolas F
    IEEE/ACM Trans Comput Biol Bioinform; 2006; 3(3):289-302. PubMed ID: 17048466
    [TBL] [Abstract][Full Text] [Related]  

  • 29. Adaptive RAxML-NG: Accelerating Phylogenetic Inference under Maximum Likelihood using Dataset Difficulty.
    Togkousidis A; Kozlov OM; Haag J; Höhler D; Stamatakis A
    Mol Biol Evol; 2023 Oct; 40(10):. PubMed ID: 37804116
    [TBL] [Abstract][Full Text] [Related]  

  • 30. EM for phylogenetic topology reconstruction on nonhomogeneous data.
    Ibáñez-Marcelo E; Casanellas M
    BMC Evol Biol; 2014 Jun; 14():132. PubMed ID: 24938507
    [TBL] [Abstract][Full Text] [Related]  

  • 31. MetaPIGA v2.0: maximum likelihood large phylogeny estimation using the metapopulation genetic algorithm and other stochastic heuristics.
    Helaers R; Milinkovitch MC
    BMC Bioinformatics; 2010 Jul; 11():379. PubMed ID: 20633263
    [TBL] [Abstract][Full Text] [Related]  

  • 32. New approaches to phylogenetic tree search and their application to large numbers of protein alignments.
    Whelan S
    Syst Biol; 2007 Oct; 56(5):727-40. PubMed ID: 17849327
    [TBL] [Abstract][Full Text] [Related]  

  • 33. Accurate phylogenetic tree reconstruction from quartets: a heuristic approach.
    Reaz R; Bayzid MS; Rahman MS
    PLoS One; 2014; 9(8):e104008. PubMed ID: 25117474
    [TBL] [Abstract][Full Text] [Related]  

  • 34. The metapopulation genetic algorithm: An efficient solution for the problem of large phylogeny estimation.
    Lemmon AR; Milinkovitch MC
    Proc Natl Acad Sci U S A; 2002 Aug; 99(16):10516-21. PubMed ID: 12142465
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Bayesian coestimation of phylogeny and sequence alignment.
    Lunter G; Miklós I; Drummond A; Jensen JL; Hein J
    BMC Bioinformatics; 2005 Apr; 6():83. PubMed ID: 15804354
    [TBL] [Abstract][Full Text] [Related]  

  • 36. Evaluating Fast Maximum Likelihood-Based Phylogenetic Programs Using Empirical Phylogenomic Data Sets.
    Zhou X; Shen XX; Hittinger CT; Rokas A
    Mol Biol Evol; 2018 Feb; 35(2):486-503. PubMed ID: 29177474
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Stochastic search strategy for estimation of maximum likelihood phylogenetic trees.
    Salter LA; Pearl DK
    Syst Biol; 2001 Feb; 50(1):7-17. PubMed ID: 12116596
    [TBL] [Abstract][Full Text] [Related]  

  • 38. Scaling of accuracy in extremely large phylogenetic trees.
    Bininda-Emonds OR; Brady SG; Kim J; Sanderson MJ
    Pac Symp Biocomput; 2001; ():547-58. PubMed ID: 11262972
    [TBL] [Abstract][Full Text] [Related]  

  • 39. Algorithms, data structures, and numerics for likelihood-based phylogenetic inference of huge trees.
    Izquierdo-Carrasco F; Smith SA; Stamatakis A
    BMC Bioinformatics; 2011 Dec; 12():470. PubMed ID: 22165866
    [TBL] [Abstract][Full Text] [Related]  

  • 40. Property and efficiency of the maximum likelihood method for molecular phylogeny.
    Saitou N
    J Mol Evol; 1988; 27(3):261-73. PubMed ID: 3138428
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 15.