These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
2. The 'weighted sum of relative entropy': a new index for synonymous codon usage bias. Suzuki H; Saito R; Tomita M Gene; 2004 Jun; 335():19-23. PubMed ID: 15194186 [TBL] [Abstract][Full Text] [Related]
4. Reinvestigating the codon and amino acid usage of S. cerevisiae genome: a new insight from protein secondary structure analysis. Kahali B; Basak S; Ghosh TC Biochem Biophys Res Commun; 2007 Mar; 354(3):693-9. PubMed ID: 17258174 [TBL] [Abstract][Full Text] [Related]
5. Patterns of codon usage in two ciliates that reassign the genetic code: Tetrahymena thermophila and Paramecium tetraurelia. Salim HM; Ring KL; Cavalcanti AR Protist; 2008 Apr; 159(2):283-98. PubMed ID: 18207458 [TBL] [Abstract][Full Text] [Related]
6. A problem in multivariate analysis of codon usage data and a possible solution. Suzuki H; Saito R; Tomita M FEBS Lett; 2005 Nov; 579(28):6499-504. PubMed ID: 16289058 [TBL] [Abstract][Full Text] [Related]
7. [Analysis of factors shaping S. pneumoniae codon usage]. Hou ZC; Yang N Yi Chuan Xue Bao; 2002; 29(8):747-52. PubMed ID: 12200868 [TBL] [Abstract][Full Text] [Related]
8. Amino acid and codon usage profiles: adaptive changes in the frequency of amino acids and codons. Goodarzi H; Torabi N; Najafabadi HS; Archetti M Gene; 2008 Jan; 407(1-2):30-41. PubMed ID: 17977670 [TBL] [Abstract][Full Text] [Related]
9. Comparative codon and amino acid composition analysis of Tritryps-conspicuous features of Leishmania major. Chanda I; Pan A; Saha SK; Dutta C FEBS Lett; 2007 Dec; 581(30):5751-8. PubMed ID: 18037385 [TBL] [Abstract][Full Text] [Related]
10. The evolution of biased codon and amino acid usage in nematode genomes. Cutter AD; Wasmuth JD; Blaxter ML Mol Biol Evol; 2006 Dec; 23(12):2303-15. PubMed ID: 16936139 [TBL] [Abstract][Full Text] [Related]
11. Clonorchis sinensis: codon usage in nuclear genes. Tang Y; Cho PY; Kim TI; Hong SJ Exp Parasitol; 2007 Feb; 115(2):187-91. PubMed ID: 17027003 [TBL] [Abstract][Full Text] [Related]
12. Synonymous codon usage in environmental chlamydia UWE25 reflects an evolutional divergence from pathogenic chlamydiae. Zhou T; Sun X; Lu Z Gene; 2006 Mar; 368():117-25. PubMed ID: 16380221 [TBL] [Abstract][Full Text] [Related]
13. The relationship between synonymous codon usage and protein structure in Escherichia coli and Homo sapiens. Gu W; Zhou T; Ma J; Sun X; Lu Z Biosystems; 2004 Feb; 73(2):89-97. PubMed ID: 15013221 [TBL] [Abstract][Full Text] [Related]
14. Factors influencing synonymous codon and amino acid usage biases in Mimivirus. Sau K; Gupta SK; Sau S; Mandal SC; Ghosh TC Biosystems; 2006 Aug; 85(2):107-13. PubMed ID: 16442213 [TBL] [Abstract][Full Text] [Related]
15. Evolution of base composition and codon usage bias in the genus Flavivirus. Jenkins GM; Pagel M; Gould EA; de A Zanotto PM; Holmes EC J Mol Evol; 2001 Apr; 52(4):383-90. PubMed ID: 11343134 [TBL] [Abstract][Full Text] [Related]
16. Codon optimization of papillomavirus genes. Müller M Methods Mol Med; 2005; 119():433-44. PubMed ID: 16350416 [TBL] [Abstract][Full Text] [Related]