869 related articles for article (PubMed ID: 9514726)
1. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
Jackson RM; Gabb HA; Sternberg MJ
J Mol Biol; 1998 Feb; 276(1):265-85. PubMed ID: 9514726
[TBL] [Abstract][Full Text] [Related]
2. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
Schueler-Furman O; Wang C; Baker D
Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
[TBL] [Abstract][Full Text] [Related]
3. A continuum model for protein-protein interactions: application to the docking problem.
Jackson RM; Sternberg MJ
J Mol Biol; 1995 Jul; 250(2):258-75. PubMed ID: 7541840
[TBL] [Abstract][Full Text] [Related]
4. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
Taylor RD; Jewsbury PJ; Essex JW
J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
[TBL] [Abstract][Full Text] [Related]
5. Complex-type-dependent scoring functions in protein-protein docking.
Li CH; Ma XH; Shen LZ; Chang S; Chen WZ; Wang CX
Biophys Chem; 2007 Aug; 129(1):1-10. PubMed ID: 17540496
[TBL] [Abstract][Full Text] [Related]
6. Protein-protein recognition analyzed by docking simulation.
Cherfils J; Duquerroy S; Janin J
Proteins; 1991; 11(4):271-80. PubMed ID: 1758882
[TBL] [Abstract][Full Text] [Related]
7. Modelling protein docking using shape complementarity, electrostatics and biochemical information.
Gabb HA; Jackson RM; Sternberg MJ
J Mol Biol; 1997 Sep; 272(1):106-20. PubMed ID: 9299341
[TBL] [Abstract][Full Text] [Related]
8. Refinement of protein cores and protein-peptide interfaces using a potential scaling approach.
Riemann RN; Zacharias M
Protein Eng Des Sel; 2005 Oct; 18(10):465-76. PubMed ID: 16155119
[TBL] [Abstract][Full Text] [Related]
9. Incorporating receptor flexibility in the molecular design of protein interfaces.
Li L; Liang S; Pilcher MM; Meroueh SO
Protein Eng Des Sel; 2009 Sep; 22(9):575-86. PubMed ID: 19643976
[TBL] [Abstract][Full Text] [Related]
10. Amino acid conformational preferences and solvation of polar backbone atoms in peptides and proteins.
Avbelj F
J Mol Biol; 2000 Jul; 300(5):1335-59. PubMed ID: 10903873
[TBL] [Abstract][Full Text] [Related]
11. Structural mining: self-consistent design on flexible protein-peptide docking and transferable binding affinity potential.
Liu Z; Dominy BN; Shakhnovich EI
J Am Chem Soc; 2004 Jul; 126(27):8515-28. PubMed ID: 15238009
[TBL] [Abstract][Full Text] [Related]
12. BiGGER: a new (soft) docking algorithm for predicting protein interactions.
Palma PN; Krippahl L; Wampler JE; Moura JJ
Proteins; 2000 Jun; 39(4):372-84. PubMed ID: 10813819
[TBL] [Abstract][Full Text] [Related]
13. Discrimination between native and intentionally misfolded conformations of proteins: ES/IS, a new method for calculating conformational free energy that uses both dynamics simulations with an explicit solvent and an implicit solvent continuum model.
Vorobjev YN; Almagro JC; Hermans J
Proteins; 1998 Sep; 32(4):399-413. PubMed ID: 9726412
[TBL] [Abstract][Full Text] [Related]
14. ROSETTALIGAND: protein-small molecule docking with full side-chain flexibility.
Meiler J; Baker D
Proteins; 2006 Nov; 65(3):538-48. PubMed ID: 16972285
[TBL] [Abstract][Full Text] [Related]
15. Improving CAPRI predictions: optimized desolvation for rigid-body docking.
Fernández-Recio J; Abagyan R; Totrov M
Proteins; 2005 Aug; 60(2):308-13. PubMed ID: 15981266
[TBL] [Abstract][Full Text] [Related]
16. Protein flexibility in ligand docking and virtual screening to protein kinases.
Cavasotto CN; Abagyan RA
J Mol Biol; 2004 Mar; 337(1):209-25. PubMed ID: 15001363
[TBL] [Abstract][Full Text] [Related]
17. Accounting for loop flexibility during protein-protein docking.
Bastard K; Prévost C; Zacharias M
Proteins; 2006 Mar; 62(4):956-69. PubMed ID: 16372349
[TBL] [Abstract][Full Text] [Related]
18. Protein-protein docking with a reduced protein model accounting for side-chain flexibility.
Zacharias M
Protein Sci; 2003 Jun; 12(6):1271-82. PubMed ID: 12761398
[TBL] [Abstract][Full Text] [Related]
19. Ab initio prediction of peptide-MHC binding geometry for diverse class I MHC allotypes.
Bordner AJ; Abagyan R
Proteins; 2006 May; 63(3):512-26. PubMed ID: 16470819
[TBL] [Abstract][Full Text] [Related]
20. Computing van der Waals energies in the context of the rotamer approximation.
Grigoryan G; Ochoa A; Keating AE
Proteins; 2007 Sep; 68(4):863-78. PubMed ID: 17554777
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
