These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

124 related articles for article (PubMed ID: 9520500)

  • 1. Comparative accuracy of methods for protein sequence similarity search.
    Agarwal P; States DJ
    Bioinformatics; 1998; 14(1):40-7. PubMed ID: 9520500
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparison of methods for searching protein sequence databases.
    Pearson WR
    Protein Sci; 1995 Jun; 4(6):1145-60. PubMed ID: 7549879
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Flexible sequence similarity searching with the FASTA3 program package.
    Pearson WR
    Methods Mol Biol; 2000; 132():185-219. PubMed ID: 10547837
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Hidden Markov models for detecting remote protein homologies.
    Karplus K; Barrett C; Hughey R
    Bioinformatics; 1998; 14(10):846-56. PubMed ID: 9927713
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships.
    Brenner SE; Chothia C; Hubbard TJ
    Proc Natl Acad Sci U S A; 1998 May; 95(11):6073-8. PubMed ID: 9600919
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Effective protein sequence comparison.
    Pearson WR
    Methods Enzymol; 1996; 266():227-58. PubMed ID: 8743688
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Combining sensitive database searches with multiple intermediates to detect distant homologues.
    Salamov AA; Suwa M; Orengo CA; Swindells MB
    Protein Eng; 1999 Feb; 12(2):95-100. PubMed ID: 10195280
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Searching protein sequence libraries: comparison of the sensitivity and selectivity of the Smith-Waterman and FASTA algorithms.
    Pearson WR
    Genomics; 1991 Nov; 11(3):635-50. PubMed ID: 1774068
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Fast and accurate database homology search using upper bounds of local alignment scores.
    Itoh M; Goto S; Akutsu T; Kanehisa M
    Bioinformatics; 2005 Apr; 21(7):912-21. PubMed ID: 15509606
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Sensitivity and selectivity in protein similarity searches: a comparison of Smith-Waterman in hardware to BLAST and FASTA.
    Shpaer EG; Robinson M; Yee D; Candlin JD; Mines R; Hunkapiller T
    Genomics; 1996 Dec; 38(2):179-91. PubMed ID: 8954800
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Increased coverage obtained by combination of methods for protein sequence database searching.
    Webber C; Barton GJ
    Bioinformatics; 2003 Jul; 19(11):1397-403. PubMed ID: 12874052
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Testing statistical significance scores of sequence comparison methods with structure similarity.
    Hulsen T; de Vlieg J; Leunissen JA; Groenen PM
    BMC Bioinformatics; 2006 Oct; 7():444. PubMed ID: 17038163
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BLAST and FASTA similarity searching for multiple sequence alignment.
    Pearson WR
    Methods Mol Biol; 2014; 1079():75-101. PubMed ID: 24170396
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improved BLAST searches using longer words for protein seeding.
    Shiryev SA; Papadopoulos JS; Schäffer AA; Agarwala R
    Bioinformatics; 2007 Nov; 23(21):2949-51. PubMed ID: 17921491
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Estimation of P-values for global alignments of protein sequences.
    Webber C; Barton GJ
    Bioinformatics; 2001 Dec; 17(12):1158-67. PubMed ID: 11751224
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Query-seeded iterative sequence similarity searching improves selectivity 5-20-fold.
    Pearson WR; Li W; Lopez R
    Nucleic Acids Res; 2017 Apr; 45(7):e46. PubMed ID: 27923999
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Assessing sequence comparison methods with the average precision criterion.
    Chen Z
    Bioinformatics; 2003 Dec; 19(18):2456-60. PubMed ID: 14668231
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities.
    Roshan U; Chikkagoudar S; Livesay DR
    BMC Bioinformatics; 2008 Jan; 9():61. PubMed ID: 18226231
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Filtering redundancies for sequence similarity search programs.
    Cantalloube H; Chomilier J; Chiusa S; Lonquety M; Spadoni JL; Zagury JF
    J Biomol Struct Dyn; 2005 Feb; 22(4):487-92. PubMed ID: 15588112
    [TBL] [Abstract][Full Text] [Related]  

  • 20. CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment.
    Manavski SA; Valle G
    BMC Bioinformatics; 2008 Mar; 9 Suppl 2(Suppl 2):S10. PubMed ID: 18387198
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.