753 related articles for article (PubMed ID: 9539414)
1. Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene.
Nielsen R; Yang Z
Genetics; 1998 Mar; 148(3):929-36. PubMed ID: 9539414
[TBL] [Abstract][Full Text] [Related]
2. A method for detecting positive selection at single amino acid sites.
Suzuki Y; Gojobori T
Mol Biol Evol; 1999 Oct; 16(10):1315-28. PubMed ID: 10563013
[TBL] [Abstract][Full Text] [Related]
3. Codon-substitution models for heterogeneous selection pressure at amino acid sites.
Yang Z; Nielsen R; Goldman N; Pedersen AM
Genetics; 2000 May; 155(1):431-49. PubMed ID: 10790415
[TBL] [Abstract][Full Text] [Related]
4. A new algorithm for analysis of within-host HIV-1 evolution.
Ren F; Ogishima S; Tanaka H
Pac Symp Biocomput; 2001; ():595-605. PubMed ID: 11262976
[TBL] [Abstract][Full Text] [Related]
5. Not so different after all: a comparison of methods for detecting amino acid sites under selection.
Kosakovsky Pond SL; Frost SD
Mol Biol Evol; 2005 May; 22(5):1208-22. PubMed ID: 15703242
[TBL] [Abstract][Full Text] [Related]
6. Evolution and biological characterization of human immunodeficiency virus type 1 subtype E gp120 V3 sequences following horizontal and vertical virus transmission in a single family.
Sato H; Shiino T; Kodaka N; Taniguchi K; Tomita Y; Kato K; Miyakuni T; Takebe Y
J Virol; 1999 May; 73(5):3551-9. PubMed ID: 10196244
[TBL] [Abstract][Full Text] [Related]
7. A group of V3 sequences from human immunodeficiency virus type 1 subtype E non-syncytium-inducing, CCR5-using variants are resistant to positive selection pressure.
Shiino T; Kato K; Kodaka N; Miyakuni T; Takebe Y; Sato H
J Virol; 2000 Feb; 74(3):1069-78. PubMed ID: 10627516
[TBL] [Abstract][Full Text] [Related]
8. Maximum likelihood analysis of adaptive evolution in HIV-1 gp120 env gene.
Yang Z
Pac Symp Biocomput; 2001; ():226-37. PubMed ID: 11262943
[TBL] [Abstract][Full Text] [Related]
9. Reevaluation of amino acid variability of the human immunodeficiency virus type 1 gp120 envelope glycoprotein and prediction of new discontinuous epitopes.
Yamaguchi-Kabata Y; Gojobori T
J Virol; 2000 May; 74(9):4335-50. PubMed ID: 10756049
[TBL] [Abstract][Full Text] [Related]
10. Evolutionary mechanisms and population dynamics of the third variable envelope region of HIV within single hosts.
Yamaguchi Y; Gojobori T
Proc Natl Acad Sci U S A; 1997 Feb; 94(4):1264-9. PubMed ID: 9037041
[TBL] [Abstract][Full Text] [Related]
11. Host-specific driving force in human immunodeficiency virus type 1 evolution in vivo.
Zhang L; Diaz RS; Ho DD; Mosley JW; Busch MP; Mayer A
J Virol; 1997 Mar; 71(3):2555-61. PubMed ID: 9032400
[TBL] [Abstract][Full Text] [Related]
12. Natural selection and the organ-specific differentiation of HIV-1 V3 hypervariable region.
Sanjuán R; Codoñer FM; Moya A; Elena SF
Evolution; 2004 Jun; 58(6):1185-94. PubMed ID: 15266969
[TBL] [Abstract][Full Text] [Related]
13. Amino acid substitutions in the human immunodeficiency virus type 1 gp120 V3 loop that change viral tropism also alter physical and functional properties of the virion envelope.
Willey RL; Theodore TS; Martin MA
J Virol; 1994 Jul; 68(7):4409-19. PubMed ID: 7515973
[TBL] [Abstract][Full Text] [Related]
14. Bursts of nonsynonymous substitutions in HIV-1 evolution reveal instances of positive selection at conservative protein sites.
Bazykin GA; Dushoff J; Levin SA; Kondrashov AS
Proc Natl Acad Sci U S A; 2006 Dec; 103(51):19396-401. PubMed ID: 17164328
[TBL] [Abstract][Full Text] [Related]
15. Linkage of amino acid variation and evolution of human immunodeficiency virus type 1 gp120 envelope glycoprotein (subtype B) with usage of the second receptor.
Yamaguchi-Kabata Y; Yamashita M; Ohkura S; Hayami M; Miura T
J Mol Evol; 2004 Mar; 58(3):333-40. PubMed ID: 15045488
[TBL] [Abstract][Full Text] [Related]
16. The site-wise log-likelihood score is a good predictor of genes under positive selection.
Wang HC; Susko E; Roger AJ
J Mol Evol; 2013 May; 76(5):280-94. PubMed ID: 23595859
[TBL] [Abstract][Full Text] [Related]
17. HIV-1 V3 envelope sequences required for macrophage infection.
Henkel T; Westervelt P; Ratner L
AIDS; 1995 Apr; 9(4):399-401. PubMed ID: 7794549
[No Abstract] [Full Text] [Related]
18. [Analysis of changes in the gp120 V3 region as observed in some patients with HIV infected from a common infection source].
Romashkin PA; Saukhat SP; Shemshura AB; Pazilin AS; Garaev MM
Vopr Virusol; 2004; 49(4):15-20. PubMed ID: 15293506
[TBL] [Abstract][Full Text] [Related]
19. Utilization of HIV-1 envelope V3 to identify X4- and R5-specific Tat and LTR sequence signatures.
Antell GC; Dampier W; Aiamkitsumrit B; Nonnemacher MR; Jacobson JM; Pirrone V; Zhong W; Kercher K; Passic S; Williams JW; Schwartz G; Hershberg U; Krebs FC; Wigdahl B
Retrovirology; 2016 May; 13(1):32. PubMed ID: 27143130
[TBL] [Abstract][Full Text] [Related]
20. An introduction to a novel population genetic approach for HIV characterization.
Perez-Sweeney B; DeSalle R; Ho JL
Infect Genet Evol; 2010 Dec; 10(8):1155-64. PubMed ID: 20637314
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
