140 related articles for article (PubMed ID: 9680689)
1. Preference functions for prediction of membrane-buried helices in integral membrane proteins.
Juretić D; Zucić D; Lucić B; Trinajstić N
Comput Chem; 1998 Jun; 22(4):279-94. PubMed ID: 9680689
[TBL] [Abstract][Full Text] [Related]
2. Conformational preference functions for predicting helices in membrane proteins.
Juretić D; Lee B; Trinajstić N; Williams RW
Biopolymers; 1993 Feb; 33(2):255-73. PubMed ID: 8485300
[TBL] [Abstract][Full Text] [Related]
3. Hydrophobicity and prediction of the secondary structure of membrane proteins and peptides.
Klevanik AV
Membr Cell Biol; 2001 Jul; 14(5):673-97. PubMed ID: 11699870
[TBL] [Abstract][Full Text] [Related]
4. kPROT: a knowledge-based scale for the propensity of residue orientation in transmembrane segments. Application to membrane protein structure prediction.
Pilpel Y; Ben-Tal N; Lancet D
J Mol Biol; 1999 Dec; 294(4):921-35. PubMed ID: 10588897
[TBL] [Abstract][Full Text] [Related]
5. Predicting alpha-helix and beta-strand segments of globular proteins.
Solovyev VV; Salamov AA
Comput Appl Biosci; 1994 Dec; 10(6):661-9. PubMed ID: 7704665
[TBL] [Abstract][Full Text] [Related]
6. Enhanced recognition of protein transmembrane domains with prediction-based structural profiles.
Cao B; Porollo A; Adamczak R; Jarrell M; Meller J
Bioinformatics; 2006 Feb; 22(3):303-9. PubMed ID: 16293670
[TBL] [Abstract][Full Text] [Related]
7. Sequence context and modified hydrophobic moment plots help identify 'horizontal' surface helices in transmembrane protein structure prediction.
Orgel JP
J Struct Biol; 2004 Oct; 148(1):51-65. PubMed ID: 15363787
[TBL] [Abstract][Full Text] [Related]
8. Physicochemical factors for discriminating between soluble and membrane proteins: hydrophobicity of helical segments and protein length.
Mitaku S; Hirokawa T
Protein Eng; 1999 Nov; 12(11):953-7. PubMed ID: 10585500
[TBL] [Abstract][Full Text] [Related]
9. MaxSubSeq: an algorithm for segment-length optimization. The case study of the transmembrane spanning segments.
Fariselli P; Finelli M; Marchignoli D; Martelli PL; Rossi I; Casadio R
Bioinformatics; 2003 Mar; 19(4):500-5. PubMed ID: 12611805
[TBL] [Abstract][Full Text] [Related]
10. Combining hydrophobicity and helicity: a novel approach to membrane protein structure prediction.
Liu LP; Deber CM
Bioorg Med Chem; 1999 Jan; 7(1):1-7. PubMed ID: 10199651
[TBL] [Abstract][Full Text] [Related]
11. Recognition of transmembrane alpha-helical segments with environmental profiles.
Efremov RG; Vergoten G
Protein Eng; 1996 Mar; 9(3):253-63. PubMed ID: 8736492
[TBL] [Abstract][Full Text] [Related]
12. How strongly do sequence conservation patterns and empirical scales correlate with exposure patterns of transmembrane helices of membrane proteins?
Park Y; Helms V
Biopolymers; 2006 Nov; 83(4):389-99. PubMed ID: 16838301
[TBL] [Abstract][Full Text] [Related]
13. Computational differentiation of N-terminal signal peptides and transmembrane helices.
Yuan Z; Davis MJ; Zhang F; Teasdale RD
Biochem Biophys Res Commun; 2003 Dec; 312(4):1278-83. PubMed ID: 14652012
[TBL] [Abstract][Full Text] [Related]
14. Comparison of helix interactions in membrane and soluble alpha-bundle proteins.
Eilers M; Patel AB; Liu W; Smith SO
Biophys J; 2002 May; 82(5):2720-36. PubMed ID: 11964258
[TBL] [Abstract][Full Text] [Related]
15. A conformational preference parameter to predict helices in integral membrane proteins.
Mohana Rao JK; Argos P
Biochim Biophys Acta; 1986 Jan; 869(2):197-214. PubMed ID: 2935194
[TBL] [Abstract][Full Text] [Related]
16. A biophysical study of integral membrane protein folding.
Hunt JF; Earnest TN; Bousché O; Kalghatgi K; Reilly K; Horváth C; Rothschild KJ; Engelman DM
Biochemistry; 1997 Dec; 36(49):15156-76. PubMed ID: 9398244
[TBL] [Abstract][Full Text] [Related]
17. A consensus procedure for predicting the location of alpha-helical transmembrane segments in proteins.
Parodi LA; Granatir CA; Maggiora GM
Comput Appl Biosci; 1994 Sep; 10(5):527-35. PubMed ID: 7828069
[TBL] [Abstract][Full Text] [Related]
18. Reevaluation of hydropathy profiles of voltage-gated ionic channels.
Sawaryn A; Drouin H
Experientia; 1991 Sep; 47(9):962-4. PubMed ID: 1915780
[TBL] [Abstract][Full Text] [Related]
19. Prediction of transmembrane segments in proteins utilising multiple sequence alignments.
Persson B; Argos P
J Mol Biol; 1994 Mar; 237(2):182-92. PubMed ID: 8126732
[TBL] [Abstract][Full Text] [Related]
20. 50 years of amino acid hydrophobicity scales: revisiting the capacity for peptide classification.
Simm S; Einloft J; Mirus O; Schleiff E
Biol Res; 2016 Jul; 49(1):31. PubMed ID: 27378087
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]