These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
129 related articles for article (PubMed ID: 9708893)
1. Explanation by a putative triester-like mechanism for the thio effects and Mn2+ rescues in reactions catalyzed by a hammerhead ribozyme. Zhou DM; He QC; Zhou JM; Taira K FEBS Lett; 1998 Jul; 431(2):154-60. PubMed ID: 9708893 [TBL] [Abstract][Full Text] [Related]
2. Significant activity of a modified ribozyme with N7-deazaguanine at g10.1: the double-metal-ion mechanism of catalysis in reactions catalysed by hammerhead ribozymes. Nakamatsu Y; Warashina M; Kuwabara T; Tanaka Y; Yoshinari K; Taira K Genes Cells; 2000 Aug; 5(8):603-12. PubMed ID: 10947846 [TBL] [Abstract][Full Text] [Related]
3. Existence of efficient divalent metal ion-catalyzed and inefficient divalent metal ion-independent channels in reactions catalyzed by a hammerhead ribozyme. Zhou JM; Zhou DM; Takagi Y; Kasai Y; Inoue A; Baba T; Taira K Nucleic Acids Res; 2002 Jun; 30(11):2374-82. PubMed ID: 12034824 [TBL] [Abstract][Full Text] [Related]
4. Thio effects and an unconventional metal ion rescue in the genomic hepatitis delta virus ribozyme. Thaplyal P; Ganguly A; Golden BL; Hammes-Schiffer S; Bevilacqua PC Biochemistry; 2013 Sep; 52(37):6499-514. PubMed ID: 24001219 [TBL] [Abstract][Full Text] [Related]
5. A reappraisal, based on (31)P NMR, of the direct coordination of a metal ion with the phosphoryl oxygen at the cleavage site of a hammerhead ribozyme. Suzumura K; Yoshinari K; Tanaka Y; Takagi Y; Kasai Y; Warashina M; Kuwabara T; Orita M; Taira K J Am Chem Soc; 2002 Jul; 124(28):8230-6. PubMed ID: 12105900 [TBL] [Abstract][Full Text] [Related]
6. Role of metal ions in the hydrolysis reaction catalyzed by RNase P RNA from Bacillus subtilis. Warnecke JM; Held R; Busch S; Hartmann RK J Mol Biol; 1999 Jul; 290(2):433-45. PubMed ID: 10390342 [TBL] [Abstract][Full Text] [Related]
7. Explanation by the double-metal-ion mechanism of catalysis for the differential metal ion effects on the cleavage rates of 5'-oxy and 5'-thio substrates by a hammerhead ribozyme. Zhou DM; Zhang LH; Taira K Proc Natl Acad Sci U S A; 1997 Dec; 94(26):14343-8. PubMed ID: 9405614 [TBL] [Abstract][Full Text] [Related]
8. Two Divalent Metal Ions and Conformational Changes Play Roles in the Hammerhead Ribozyme Cleavage Reaction. Mir A; Chen J; Robinson K; Lendy E; Goodman J; Neau D; Golden BL Biochemistry; 2015 Oct; 54(41):6369-81. PubMed ID: 26398724 [TBL] [Abstract][Full Text] [Related]
9. A further investigation and reappraisal of the thio effect in the cleavage reaction catalyzed by a hammerhead ribozyme. Yoshinari K; Taira K Nucleic Acids Res; 2000 Apr; 28(8):1730-42. PubMed ID: 10734192 [TBL] [Abstract][Full Text] [Related]
10. Ribozymes: from mechanistic studies to applications in vivo. Ohkawa J; Koguma T; Kohda T; Taira K J Biochem; 1995 Aug; 118(2):251-8. PubMed ID: 8543555 [TBL] [Abstract][Full Text] [Related]
11. Ribonuclease P catalysis requires Mg2+ coordinated to the pro-RP oxygen of the scissile bond. Chen Y; Li X; Gegenheimer P Biochemistry; 1997 Mar; 36(9):2425-38. PubMed ID: 9054547 [TBL] [Abstract][Full Text] [Related]
12. Identification of the hammerhead ribozyme metal ion binding site responsible for rescue of the deleterious effect of a cleavage site phosphorothioate. Wang S; Karbstein K; Peracchi A; Beigelman L; Herschlag D Biochemistry; 1999 Oct; 38(43):14363-78. PubMed ID: 10572011 [TBL] [Abstract][Full Text] [Related]
13. Activities and relative affinities of divalent metals in unmodified and phosphorothioate-substituted hammerhead ribozymes. Hunsicker LM; DeRose VJ J Inorg Biochem; 2000 Jul; 80(3-4):271-81. PubMed ID: 11001099 [TBL] [Abstract][Full Text] [Related]
14. A re-investigation of the thio effect at the hammerhead cleavage site. Scott EC; Uhlenbeck OC Nucleic Acids Res; 1999 Jan; 27(2):479-84. PubMed ID: 9862968 [TBL] [Abstract][Full Text] [Related]
15. Action of metal ions directly involved in the cleavage reaction of hammerhead ribozymes. Nakamatsu Y; Warashina M; Kuwabara T; Tanaka Y; Shibata A; Yoshinari K; Taira K Nucleic Acids Symp Ser; 1999; (42):283-4. PubMed ID: 10780490 [TBL] [Abstract][Full Text] [Related]
16. Helix P4 is a divalent metal ion binding site in the conserved core of the ribonuclease P ribozyme. Christian EL; Kaye NM; Harris ME RNA; 2000 Apr; 6(4):511-9. PubMed ID: 10786842 [TBL] [Abstract][Full Text] [Related]
17. Ribozyme-mediated cleavage of a substrate analogue containing an internucleotide-bridging 5'-phosphorothioate: evidence for the single-metal model. Kuimelis RG; McLaughlin LW Biochemistry; 1996 Apr; 35(16):5308-17. PubMed ID: 8611518 [TBL] [Abstract][Full Text] [Related]
18. Molecular simulations of the pistol ribozyme: unifying the interpretation of experimental data and establishing functional links with the hammerhead ribozyme. Kostenbader K; York DM RNA; 2019 Nov; 25(11):1439-1456. PubMed ID: 31363004 [TBL] [Abstract][Full Text] [Related]
19. Metal ions play a passive role in the hairpin ribozyme catalysed reaction. Young KJ; Gill F; Grasby JA Nucleic Acids Res; 1997 Oct; 25(19):3760-6. PubMed ID: 9380495 [TBL] [Abstract][Full Text] [Related]
20. Effects of phosphorothioate and 2-amino groups in hammerhead ribozymes on cleavage rates and Mg2+ binding. Koizumi M; Ohtsuka E Biochemistry; 1991 May; 30(21):5145-50. PubMed ID: 2036380 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]