303 related articles for article (PubMed ID: 9730927)
1. JOY: protein sequence-structure representation and analysis.
Mizuguchi K; Deane CM; Blundell TL; Johnson MS; Overington JP
Bioinformatics; 1998; 14(7):617-23. PubMed ID: 9730927
[TBL] [Abstract][Full Text] [Related]
2. An iterative structure-assisted approach to sequence alignment and comparative modeling.
Burke DF; Deane CM; Nagarajaram HA; Campillo N; Martin-Martinez M; Mendes J; Molina F; Perry J; Reddy BV; Soares CM; Steward RE; Williams M; Carrondo MA; Blundell TL; Mizuguchi K
Proteins; 1999; Suppl 3():55-60. PubMed ID: 10526352
[TBL] [Abstract][Full Text] [Related]
3. HOMSTRAD: recent developments of the Homologous Protein Structure Alignment Database.
Stebbings LA; Mizuguchi K
Nucleic Acids Res; 2004 Jan; 32(Database issue):D203-7. PubMed ID: 14681395
[TBL] [Abstract][Full Text] [Related]
4. HOMSTRAD: a database of protein structure alignments for homologous families.
Mizuguchi K; Deane CM; Blundell TL; Overington JP
Protein Sci; 1998 Nov; 7(11):2469-71. PubMed ID: 9828015
[TBL] [Abstract][Full Text] [Related]
5. HOMSTRAD: adding sequence information to structure-based alignments of homologous protein families.
de Bakker PI; Bateman A; Burke DF; Miguel RN; Mizuguchi K; Shi J; Shirai H; Blundell TL
Bioinformatics; 2001 Aug; 17(8):748-9. PubMed ID: 11524380
[TBL] [Abstract][Full Text] [Related]
6. FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.
Shi J; Blundell TL; Mizuguchi K
J Mol Biol; 2001 Jun; 310(1):243-57. PubMed ID: 11419950
[TBL] [Abstract][Full Text] [Related]
7. XSuLT: a web server for structural annotation and representation of sequence-structure alignments.
Ochoa-Montaño B; Blundell TL
Nucleic Acids Res; 2017 Jul; 45(W1):W381-W387. PubMed ID: 28510698
[TBL] [Abstract][Full Text] [Related]
8. Sequence-structure homology recognition by iterative alignment refinement and comparative modeling.
Williams MG; Shirai H; Shi J; Nagendra HG; Mueller J; Mizuguchi K; Miguel RN; Lovell SC; Innis CA; Deane CM; Chen L; Campillo N; Burke DF; Blundell TL; de Bakker PI
Proteins; 2001; Suppl 5():92-7. PubMed ID: 11835486
[TBL] [Abstract][Full Text] [Related]
9. DIVCLUS: an automatic method in the GEANFAMMER package that finds homologous domains in single- and multi-domain proteins.
Park J; Teichmann SA
Bioinformatics; 1998; 14(2):144-50. PubMed ID: 9545446
[TBL] [Abstract][Full Text] [Related]
10. Browsing the SLoop database of structurally classified loops connecting elements of protein secondary structure.
Burke DF; Deane CM; Blundell TL
Bioinformatics; 2000 Jun; 16(6):513-9. PubMed ID: 10980148
[TBL] [Abstract][Full Text] [Related]
11. Sequence patterns derived from the automated prediction of functional residues in structurally-aligned homologous protein families.
Miguel RN
Bioinformatics; 2004 Oct; 20(15):2380-9. PubMed ID: 15073006
[TBL] [Abstract][Full Text] [Related]
12. ESPript: analysis of multiple sequence alignments in PostScript.
Gouet P; Courcelle E; Stuart DI; Métoz F
Bioinformatics; 1999 Apr; 15(4):305-8. PubMed ID: 10320398
[TBL] [Abstract][Full Text] [Related]
13. Ulla: a program for calculating environment-specific amino acid substitution tables.
Lee S; Blundell TL
Bioinformatics; 2009 Aug; 25(15):1976-7. PubMed ID: 19417059
[TBL] [Abstract][Full Text] [Related]
14. BIPA: a database for protein-nucleic acid interaction in 3D structures.
Lee S; Blundell TL
Bioinformatics; 2009 Jun; 25(12):1559-60. PubMed ID: 19357098
[TBL] [Abstract][Full Text] [Related]
15. PASS2: an automated database of protein alignments organised as structural superfamilies.
Bhaduri A; Pugalenthi G; Sowdhamini R
BMC Bioinformatics; 2004 Apr; 5():35. PubMed ID: 15059245
[TBL] [Abstract][Full Text] [Related]
16. Improved protein loop prediction from sequence alone.
Burke DF; Deane CM
Protein Eng; 2001 Jul; 14(7):473-8. PubMed ID: 11522920
[TBL] [Abstract][Full Text] [Related]
17. Incremental threading optimization (TITO) to help alignment and modelling of remote homologues.
Labesse G; Mornon J
Bioinformatics; 1998; 14(2):206-11. PubMed ID: 9545453
[TBL] [Abstract][Full Text] [Related]
18. VISTAL--a new 2D visualization tool of protein 3D structural alignments.
Kolodny R; Honig B
Bioinformatics; 2006 Sep; 22(17):2166-7. PubMed ID: 16837525
[TBL] [Abstract][Full Text] [Related]
19. Spial: analysis of subtype-specific features in multiple sequence alignments of proteins.
Wuster A; Venkatakrishnan AJ; Schertler GF; Babu MM
Bioinformatics; 2010 Nov; 26(22):2906-7. PubMed ID: 20880955
[TBL] [Abstract][Full Text] [Related]
20. The CATH Dictionary of Homologous Superfamilies (DHS): a consensus approach for identifying distant structural homologues.
Bray JE; Todd AE; Pearl FM; Thornton JM; Orengo CA
Protein Eng; 2000 Mar; 13(3):153-65. PubMed ID: 10775657
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]