176 related articles for article (PubMed ID: 9735291)
1. Two distinct modes of protein-induced bending in DNA.
El Hassan MA; Calladine CR
J Mol Biol; 1998 Sep; 282(2):331-43. PubMed ID: 9735291
[TBL] [Abstract][Full Text] [Related]
2. Propeller-twisting of base-pairs and the conformational mobility of dinucleotide steps in DNA.
el Hassan MA; Calladine CR
J Mol Biol; 1996 May; 259(1):95-103. PubMed ID: 8648652
[TBL] [Abstract][Full Text] [Related]
3. Sequence-dependent DNA structure: the role of the sugar-phosphate backbone.
Packer MJ; Hunter CA
J Mol Biol; 1998 Jul; 280(3):407-20. PubMed ID: 9665845
[TBL] [Abstract][Full Text] [Related]
4. Molecular dynamics simulations of B '-DNA: sequence effects on A-tract-induced bending and flexibility.
McConnell KJ; Beveridge DL
J Mol Biol; 2001 Nov; 314(1):23-40. PubMed ID: 11724529
[TBL] [Abstract][Full Text] [Related]
5. Helix bending as a factor in protein/DNA recognition.
Dickerson RE; Chiu TK
Biopolymers; 1997; 44(4):361-403. PubMed ID: 9782776
[TBL] [Abstract][Full Text] [Related]
6. Intrinsic bending and deformability at the T-A step of CCTTTAAAGG: a comparative analysis of T-A and A-T steps within A-tracts.
Mack DR; Chiu TK; Dickerson RE
J Mol Biol; 2001 Oct; 312(5):1037-49. PubMed ID: 11580248
[TBL] [Abstract][Full Text] [Related]
7. Comparison of major groove hydration in isomorphous A-DNA octamers and dependence on base sequence and local helix geometry.
Tippin DB; Sundaralingam M
Biochemistry; 1997 Jan; 36(3):536-43. PubMed ID: 9012669
[TBL] [Abstract][Full Text] [Related]
8. A-Tract bending: insights into experimental structures by computational models.
Strahs D; Schlick T
J Mol Biol; 2000 Aug; 301(3):643-63. PubMed ID: 10966775
[TBL] [Abstract][Full Text] [Related]
9. Dynamic simulations of 13 TATA variants refine kinetic hypotheses of sequence/activity relationships.
Qian X; Strahs D; Schlick T
J Mol Biol; 2001 May; 308(4):681-703. PubMed ID: 11350169
[TBL] [Abstract][Full Text] [Related]
10. DNA stretching and compression: large-scale simulations of double helical structures.
Kosikov KM; Gorin AA; Zhurkin VB; Olson WK
J Mol Biol; 1999 Jun; 289(5):1301-26. PubMed ID: 10373369
[TBL] [Abstract][Full Text] [Related]
11. The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps.
Goodsell DS; Kaczor-Grzeskowiak M; Dickerson RE
J Mol Biol; 1994 May; 239(1):79-96. PubMed ID: 8196049
[TBL] [Abstract][Full Text] [Related]
12. 1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.
Chiu TK; Dickerson RE
J Mol Biol; 2000 Aug; 301(4):915-45. PubMed ID: 10966796
[TBL] [Abstract][Full Text] [Related]
13. Protein-DNA interactions: A structural analysis.
Jones S; van Heyningen P; Berman HM; Thornton JM
J Mol Biol; 1999 Apr; 287(5):877-96. PubMed ID: 10222198
[TBL] [Abstract][Full Text] [Related]
14. A stochastic model for helix bending in B-DNA.
Dickerson RE; Kopka ML; Pjura P
J Biomol Struct Dyn; 1983 Dec; 1(3):755-71. PubMed ID: 6400899
[TBL] [Abstract][Full Text] [Related]
15. DNA bending: the prevalence of kinkiness and the virtues of normality.
Dickerson RE
Nucleic Acids Res; 1998 Apr; 26(8):1906-26. PubMed ID: 9518483
[TBL] [Abstract][Full Text] [Related]
16. Sequence preference for BI/BII conformations in DNA: MD and crystal structure data analysis.
Madhumalar A; Bansal M
J Biomol Struct Dyn; 2005 Aug; 23(1):13-27. PubMed ID: 15918673
[TBL] [Abstract][Full Text] [Related]
17. The role of lysine 55 in determining the specificity of the purine repressor for its operators through minor groove interactions.
Glasfeld A; Koehler AN; Schumacher MA; Brennan RG
J Mol Biol; 1999 Aug; 291(2):347-61. PubMed ID: 10438625
[TBL] [Abstract][Full Text] [Related]
18. A-form conformational motifs in ligand-bound DNA structures.
Lu XJ; Shakked Z; Olson WK
J Mol Biol; 2000 Jul; 300(4):819-40. PubMed ID: 10891271
[TBL] [Abstract][Full Text] [Related]
19. Free-energy perturbation methods to study structure and energetics of DNA adducts: results for the major N2-dG adduct of benzo[a]pyrene in two conformations and different sequence contexts.
Chandani S; Lee CH; Loechler EL
Chem Res Toxicol; 2005 Jul; 18(7):1108-23. PubMed ID: 16022503
[TBL] [Abstract][Full Text] [Related]
20. C-H.O hydrogen bonds in minor groove of A-tracts in DNA double helices.
Ghosh A; Bansal M
J Mol Biol; 1999 Dec; 294(5):1149-58. PubMed ID: 10600373
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]