BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

105 related articles for article (PubMed ID: 9773344)

  • 1. Homology detection via family pairwise search.
    Grundy WN
    J Comput Biol; 1998; 5(3):479-91. PubMed ID: 9773344
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Family pairwise search with embedded motif models.
    Grundy WN; Bailey TL
    Bioinformatics; 1999 Jun; 15(6):463-70. PubMed ID: 10383471
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Hidden Markov models in computational biology. Applications to protein modeling.
    Krogh A; Brown M; Mian IS; Sjölander K; Haussler D
    J Mol Biol; 1994 Feb; 235(5):1501-31. PubMed ID: 8107089
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SVM-HUSTLE--an iterative semi-supervised machine learning approach for pairwise protein remote homology detection.
    Shah AR; Oehmen CS; Webb-Robertson BJ
    Bioinformatics; 2008 Mar; 24(6):783-90. PubMed ID: 18245127
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Meta-MEME: motif-based hidden Markov models of protein families.
    Grundy WN; Bailey TL; Elkan CP; Baker ME
    Comput Appl Biosci; 1997 Aug; 13(4):397-406. PubMed ID: 9283754
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Protein homology detection by HMM-HMM comparison.
    Söding J
    Bioinformatics; 2005 Apr; 21(7):951-60. PubMed ID: 15531603
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods.
    Park J; Karplus K; Barrett C; Hughey R; Haussler D; Hubbard T; Chothia C
    J Mol Biol; 1998 Dec; 284(4):1201-10. PubMed ID: 9837738
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Detecting distant homologs using phylogenetic tree-based HMMs.
    Qian B; Goldstein RA
    Proteins; 2003 Aug; 52(3):446-53. PubMed ID: 12866055
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Comparing protein sequence-based and predicted secondary structure-based methods for identification of remote homologs.
    Geetha V; Di Francesco V; Garnier J; Munson PJ
    Protein Eng; 1999 Jul; 12(7):527-34. PubMed ID: 10436078
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Hidden Markov model analysis of motifs in steroid dehydrogenases and their homologs.
    Grundy WN; Bailey TL; Elkan CP; Baker ME
    Biochem Biophys Res Commun; 1997 Feb; 231(3):760-6. PubMed ID: 9070888
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Accurate domain identification with structure-anchored hidden Markov models, saHMMs.
    Tångrot JE; Kågström B; Sauer UH
    Proteins; 2009 Aug; 76(2):343-52. PubMed ID: 19173309
    [TBL] [Abstract][Full Text] [Related]  

  • 12. FastBLAST: homology relationships for millions of proteins.
    Price MN; Dehal PS; Arkin AP
    PLoS One; 2008; 3(10):e3589. PubMed ID: 18974889
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Improving profile HMM discrimination by adapting transition probabilities.
    Wistrand M; Sonnhammer EL
    J Mol Biol; 2004 May; 338(4):847-54. PubMed ID: 15099750
    [TBL] [Abstract][Full Text] [Related]  

  • 14. HMM-ModE--improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying emission probabilities with negative training sequences.
    Srivastava PK; Desai DK; Nandi S; Lynn AM
    BMC Bioinformatics; 2007 Mar; 8():104. PubMed ID: 17389042
    [TBL] [Abstract][Full Text] [Related]  

  • 15. HIPPI: highly accurate protein family classification with ensembles of HMMs.
    Nguyen NP; Nute M; Mirarab S; Warnow T
    BMC Genomics; 2016 Nov; 17(Suppl 10):765. PubMed ID: 28185571
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Phylogenetic information improves homology detection.
    Rehmsmeier M; Vingron M
    Proteins; 2001 Dec; 45(4):360-71. PubMed ID: 11746684
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A novel approach to remote homology detection: jumping alignments.
    Spang R; Rehmsmeier M; Stoye J
    J Comput Biol; 2002; 9(5):747-60. PubMed ID: 12487762
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure.
    Gough J; Karplus K; Hughey R; Chothia C
    J Mol Biol; 2001 Nov; 313(4):903-19. PubMed ID: 11697912
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Fast model-based protein homology detection without alignment.
    Hochreiter S; Heusel M; Obermayer K
    Bioinformatics; 2007 Jul; 23(14):1728-36. PubMed ID: 17488755
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A feature vector integration approach for a generalized support vector machine pairwise homology algorithm.
    Webb-Robertson BJ; Oehmen CS; Shah AR
    Comput Biol Chem; 2008 Dec; 32(6):458-61. PubMed ID: 18722814
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.