190 related articles for article (PubMed ID: 9779790)
1. Exploring the conformational space of protein side chains using dead-end elimination and the A* algorithm.
Leach AR; Lemon AP
Proteins; 1998 Nov; 33(2):227-39. PubMed ID: 9779790
[TBL] [Abstract][Full Text] [Related]
2. IRECS: a new algorithm for the selection of most probable ensembles of side-chain conformations in protein models.
Hartmann C; Antes I; Lengauer T
Protein Sci; 2007 Jul; 16(7):1294-307. PubMed ID: 17567749
[TBL] [Abstract][Full Text] [Related]
3. The fuzzy-end elimination theorem: correctly implementing the side chain placement algorithm based on the dead-end elimination theorem.
Lasters I; Desmet J
Protein Eng; 1993 Sep; 6(7):717-22. PubMed ID: 8248095
[TBL] [Abstract][Full Text] [Related]
4. Theoretical and algorithmical optimization of the dead-end elimination theorem.
Desmet J; De Maeyer M; Lasters I
Pac Symp Biocomput; 1997; ():122-33. PubMed ID: 9390285
[TBL] [Abstract][Full Text] [Related]
5. Ligand docking to proteins with discrete side-chain flexibility.
Leach AR
J Mol Biol; 1994 Jan; 235(1):345-56. PubMed ID: 8289255
[TBL] [Abstract][Full Text] [Related]
6. The dead-end elimination theorem and its use in protein side-chain positioning.
Desmet J; De Maeyer M; Hazes B; Lasters I
Nature; 1992 Apr; 356(6369):539-42. PubMed ID: 21488406
[TBL] [Abstract][Full Text] [Related]
7. The minimized dead-end elimination criterion and its application to protein redesign in a hybrid scoring and search algorithm for computing partition functions over molecular ensembles.
Georgiev I; Lilien RH; Donald BR
J Comput Chem; 2008 Jul; 29(10):1527-42. PubMed ID: 18293294
[TBL] [Abstract][Full Text] [Related]
8. Finding the global minimum: a fuzzy end elimination implementation.
Keller DA; Shibata M; Marcus E; Ornstein RL; Rein R
Protein Eng; 1995 Sep; 8(9):893-904. PubMed ID: 8746727
[TBL] [Abstract][Full Text] [Related]
9. Rotamer strain energy in protein helices - quantification of a major force opposing protein folding.
Penel S; Doig AJ
J Mol Biol; 2001 Jan; 305(4):961-8. PubMed ID: 11162106
[TBL] [Abstract][Full Text] [Related]
10. Enhanced dead-end elimination in the search for the global minimum energy conformation of a collection of protein side chains.
Lasters I; De Maeyer M; Desmet J
Protein Eng; 1995 Aug; 8(8):815-22. PubMed ID: 8637851
[TBL] [Abstract][Full Text] [Related]
11. Rotamer libraries and probabilities of transition between rotamers for the side chains in protein-protein binding.
Kirys T; Ruvinsky AM; Tuzikov AV; Vakser IA
Proteins; 2012 Aug; 80(8):2089-98. PubMed ID: 22544766
[TBL] [Abstract][Full Text] [Related]
12. Efficient rotamer elimination applied to protein side-chains and related spin glasses.
Goldstein RF
Biophys J; 1994 May; 66(5):1335-40. PubMed ID: 8061189
[TBL] [Abstract][Full Text] [Related]
13. Fast and accurate side-chain topology and energy refinement (FASTER) as a new method for protein structure optimization.
Desmet J; Spriet J; Lasters I
Proteins; 2002 Jul; 48(1):31-43. PubMed ID: 12012335
[TBL] [Abstract][Full Text] [Related]
14. A protein-dependent side-chain rotamer library.
Bhuyan MS; Gao X
BMC Bioinformatics; 2011 Dec; 12 Suppl 14(Suppl 14):S10. PubMed ID: 22373394
[TBL] [Abstract][Full Text] [Related]
15. Improved side-chain modeling for protein-protein docking.
Wang C; Schueler-Furman O; Baker D
Protein Sci; 2005 May; 14(5):1328-39. PubMed ID: 15802647
[TBL] [Abstract][Full Text] [Related]
16. Critical assessment of side-chain conformational space sampling procedures designed for quantifying the effect of side-chain environment.
Gautier R; Tufféry P
J Comput Chem; 2003 Nov; 24(15):1950-61. PubMed ID: 14515377
[TBL] [Abstract][Full Text] [Related]
17. Molprobity's ultimate rotamer-library distributions for model validation.
Hintze BJ; Lewis SM; Richardson JS; Richardson DC
Proteins; 2016 Sep; 84(9):1177-89. PubMed ID: 27018641
[TBL] [Abstract][Full Text] [Related]
18. An Algorithm for Computing Side Chain Conformational Variations of a Protein Tunnel/Channel.
Seo U; Kim KJ; Kang BS
Molecules; 2018 Sep; 23(10):. PubMed ID: 30261587
[TBL] [Abstract][Full Text] [Related]
19. The energetics of off-rotamer protein side-chain conformations.
Petrella RJ; Karplus M
J Mol Biol; 2001 Oct; 312(5):1161-75. PubMed ID: 11580256
[TBL] [Abstract][Full Text] [Related]
20. A stochastic algorithm for global optimization and for best populations: a test case of side chains in proteins.
Glick M; Rayan A; Goldblum A
Proc Natl Acad Sci U S A; 2002 Jan; 99(2):703-8. PubMed ID: 11792838
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
