132 related articles for article (PubMed ID: 9783224)
1. A computational system for modelling flexible protein-protein and protein-DNA docking.
Sternberg MJ; Aloy P; Gabb HA; Jackson RM; Moont G; Querol E; Aviles FX
Proc Int Conf Intell Syst Mol Biol; 1998; 6():183-92. PubMed ID: 9783224
[TBL] [Abstract][Full Text] [Related]
2. Modelling protein docking using shape complementarity, electrostatics and biochemical information.
Gabb HA; Jackson RM; Sternberg MJ
J Mol Biol; 1997 Sep; 272(1):106-20. PubMed ID: 9299341
[TBL] [Abstract][Full Text] [Related]
3. Modelling repressor proteins docking to DNA.
Aloy P; Moont G; Gabb HA; Querol E; Aviles FX; Sternberg MJ
Proteins; 1998 Dec; 33(4):535-49. PubMed ID: 9849937
[TBL] [Abstract][Full Text] [Related]
4. Refinement of protein cores and protein-peptide interfaces using a potential scaling approach.
Riemann RN; Zacharias M
Protein Eng Des Sel; 2005 Oct; 18(10):465-76. PubMed ID: 16155119
[TBL] [Abstract][Full Text] [Related]
5. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
Jackson RM; Gabb HA; Sternberg MJ
J Mol Biol; 1998 Feb; 276(1):265-85. PubMed ID: 9514726
[TBL] [Abstract][Full Text] [Related]
6. FDS: flexible ligand and receptor docking with a continuum solvent model and soft-core energy function.
Taylor RD; Jewsbury PJ; Essex JW
J Comput Chem; 2003 Oct; 24(13):1637-56. PubMed ID: 12926007
[TBL] [Abstract][Full Text] [Related]
7. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
Schueler-Furman O; Wang C; Baker D
Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
[TBL] [Abstract][Full Text] [Related]
8. Macromolecular recognition.
Deremble C; Lavery R
Curr Opin Struct Biol; 2005 Apr; 15(2):171-5. PubMed ID: 15837175
[TBL] [Abstract][Full Text] [Related]
9. Protein-protein docking by simulating the process of association subject to biochemical constraints.
Motiejunas D; Gabdoulline R; Wang T; Feldman-Salit A; Johann T; Winn PJ; Wade RC
Proteins; 2008 Jun; 71(4):1955-69. PubMed ID: 18186463
[TBL] [Abstract][Full Text] [Related]
10. Information-driven protein-DNA docking using HADDOCK: it is a matter of flexibility.
van Dijk M; van Dijk AD; Hsu V; Boelens R; Bonvin AM
Nucleic Acids Res; 2006; 34(11):3317-25. PubMed ID: 16820531
[TBL] [Abstract][Full Text] [Related]
11. Structure-based prediction of transcription factor binding sites using a protein-DNA docking approach.
Liu Z; Guo JT; Li T; Xu Y
Proteins; 2008 Sep; 72(4):1114-24. PubMed ID: 18320590
[TBL] [Abstract][Full Text] [Related]
12. Water-mediated protein-DNA interactions: the relationship of thermodynamics to structural detail.
Morton CJ; Ladbury JE
Protein Sci; 1996 Oct; 5(10):2115-8. PubMed ID: 8897612
[TBL] [Abstract][Full Text] [Related]
13. Examination of shape complementarity in docking of unbound proteins.
Norel R; Petrey D; Wolfson HJ; Nussinov R
Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824
[TBL] [Abstract][Full Text] [Related]
14. Computational structure analysis of biomacromolecule complexes by interface geometry.
Mahdavi S; Salehzadeh-Yazdi A; Mohades A; Masoudi-Nejad A
Comput Biol Chem; 2013 Dec; 47():16-23. PubMed ID: 23850846
[TBL] [Abstract][Full Text] [Related]
15. Use of pair potentials across protein interfaces in screening predicted docked complexes.
Moont G; Gabb HA; Sternberg MJ
Proteins; 1999 May; 35(3):364-73. PubMed ID: 10328272
[TBL] [Abstract][Full Text] [Related]
16. MIAX: a system for assessment of macromolecular interaction. 3) A parallel hybrid GA for flexible protein docking.
Del Carpio CA; Yoshimori A
Genome Inform Ser Workshop Genome Inform; 2000; 11():205-14. PubMed ID: 11700601
[TBL] [Abstract][Full Text] [Related]
17. ParaDock: a flexible non-specific DNA--rigid protein docking algorithm.
Banitt I; Wolfson HJ
Nucleic Acids Res; 2011 Nov; 39(20):e135. PubMed ID: 21835777
[TBL] [Abstract][Full Text] [Related]
18. Docking unbound proteins using shape complementarity, desolvation, and electrostatics.
Chen R; Weng Z
Proteins; 2002 May; 47(3):281-94. PubMed ID: 11948782
[TBL] [Abstract][Full Text] [Related]
19. Physicochemical and residue conservation calculations to improve the ranking of protein-protein docking solutions.
Duan Y; Reddy BV; Kaznessis YN
Protein Sci; 2005 Feb; 14(2):316-28. PubMed ID: 15659366
[TBL] [Abstract][Full Text] [Related]
20. RDOCK: refinement of rigid-body protein docking predictions.
Li L; Chen R; Weng Z
Proteins; 2003 Nov; 53(3):693-707. PubMed ID: 14579360
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
