377 related articles for article (PubMed ID: 9790837)
1. DNA footprints of the two kinetically significant intermediates in formation of an RNA polymerase-promoter open complex: evidence that interactions with start site and downstream DNA induce sequential conformational changes in polymerase and DNA.
Craig ML; Tsodikov OV; McQuade KL; Schlax PE; Capp MW; Saecker RM; Record MT
J Mol Biol; 1998 Nov; 283(4):741-56. PubMed ID: 9790837
[TBL] [Abstract][Full Text] [Related]
2. Quantitative analysis of multiple-hit footprinting studies to characterize DNA conformational changes in protein-DNA complexes: application to DNA opening by Esigma70 RNA polymerase.
Tsodikov OV; Craig ML; Saecker RM; Record MT
J Mol Biol; 1998 Nov; 283(4):757-69. PubMed ID: 9790838
[TBL] [Abstract][Full Text] [Related]
3. Kinetic studies and structural models of the association of E. coli sigma(70) RNA polymerase with the lambdaP(R) promoter: large scale conformational changes in forming the kinetically significant intermediates.
Saecker RM; Tsodikov OV; McQuade KL; Schlax PE; Capp MW; Record MT
J Mol Biol; 2002 Jun; 319(3):649-71. PubMed ID: 12054861
[TBL] [Abstract][Full Text] [Related]
4. Mg2+-modulated KMnO4 reactivity of thymines in the open transcription complex reflects variation in the negative electrostatic potential along the separated DNA strands. Footprinting of Escherichia coli RNA polymerase complex at the lambdaP(R) promoter revisited.
Łoziński T; Wierzchowski KL
FEBS J; 2005 Jun; 272(11):2838-53. PubMed ID: 15943816
[TBL] [Abstract][Full Text] [Related]
5. Mg2+ ions do not induce expansion of the melted DNA region in the open complex formed by Escherichia coli RNA polymerase at a cognate synthetic Pa promoter. A quantitative KMnO4 footprinting study.
Loziiński T; Wierzchowski KL
Acta Biochim Pol; 2001; 48(2):495-510. PubMed ID: 11732619
[TBL] [Abstract][Full Text] [Related]
6. Repression of transcription initiation at 434 P(R) by 434 repressor: effects on transition of a closed to an open promoter complex.
Xu J; Koudelka GB
J Mol Biol; 2001 Jun; 309(3):573-87. PubMed ID: 11397081
[TBL] [Abstract][Full Text] [Related]
7. Mg2+ does not induce isomerization of the open transcription complex of Escherichia coli RNA polymerase at the model Pa promoter bearing consensus -10 and -35 hexamers.
Kolasa IK; Loziński T; Wierzchowski KL
Acta Biochim Pol; 2001; 48(4):985-94. PubMed ID: 11996006
[TBL] [Abstract][Full Text] [Related]
8. Stopped-flow kinetic analysis of the interaction of Escherichia coli RNA polymerase with the bacteriophage T7 A1 promoter.
Johnson RS; Chester RE
J Mol Biol; 1998 Oct; 283(2):353-70. PubMed ID: 9769210
[TBL] [Abstract][Full Text] [Related]
9. Aromatic amino acids in region 2.3 of Escherichia coli sigma 70 participate collectively in the formation of an RNA polymerase-promoter open complex.
Panaghie G; Aiyar SE; Bobb KL; Hayward RS; de Haseth PL
J Mol Biol; 2000 Jun; 299(5):1217-30. PubMed ID: 10873447
[TBL] [Abstract][Full Text] [Related]
10. Studies on the interaction of T7 RNA polymerase with a DNA template containing a site-specifically placed psoralen cross-link. I. Characterization of elongation complexes.
Sastry SS; Hearst JE
J Mol Biol; 1991 Oct; 221(4):1091-110. PubMed ID: 1942044
[TBL] [Abstract][Full Text] [Related]
11. The bacterial DNA-binding protein H-NS represses ribosomal RNA transcription by trapping RNA polymerase in the initiation complex.
Schröder O; Wagner R
J Mol Biol; 2000 May; 298(5):737-48. PubMed ID: 10801345
[TBL] [Abstract][Full Text] [Related]
12. Changes in the 17 bp spacer in the P(R) promoter of bacteriophage lambda affect steps in open complex formation that precede DNA strand separation.
McKane M; Gussin GN
J Mol Biol; 2000 Jun; 299(2):337-49. PubMed ID: 10860742
[TBL] [Abstract][Full Text] [Related]
13. Comparative analysis of the interactions of Escherichia coli sigma S and sigma 70 RNA polymerase holoenzyme with the stationary-phase-specific bolAp1 promoter.
Nguyen LH; Burgess RR
Biochemistry; 1997 Feb; 36(7):1748-54. PubMed ID: 9048558
[TBL] [Abstract][Full Text] [Related]
14. Domain 1.1 of the sigma(70) subunit of Escherichia coli RNA polymerase modulates the formation of stable polymerase/promoter complexes.
Vuthoori S; Bowers CW; McCracken A; Dombroski AJ; Hinton DM
J Mol Biol; 2001 Jun; 309(3):561-72. PubMed ID: 11397080
[TBL] [Abstract][Full Text] [Related]
15. The intercalating beta-hairpin of T7 RNA polymerase plays a role in promoter DNA melting and in stabilizing the melted DNA for efficient RNA synthesis.
Stano NM; Patel SS
J Mol Biol; 2002 Feb; 315(5):1009-25. PubMed ID: 11827472
[TBL] [Abstract][Full Text] [Related]
16. Differential melting of the transcription start site associated with changes in RNA polymerase-promoter contacts in initiating transcription complexes.
Brodolin K; Buckle M
J Mol Biol; 2001 Mar; 307(1):25-30. PubMed ID: 11243800
[TBL] [Abstract][Full Text] [Related]
17. Temperature dependence of the rate constants of the Escherichia coli RNA polymerase-lambda PR promoter interaction. Assignment of the kinetic steps corresponding to protein conformational change and DNA opening.
Roe JH; Burgess RR; Record MT
J Mol Biol; 1985 Aug; 184(3):441-53. PubMed ID: 3900414
[TBL] [Abstract][Full Text] [Related]
18. Real-time footprinting of DNA in the first kinetically significant intermediate in open complex formation by Escherichia coli RNA polymerase.
Davis CA; Bingman CA; Landick R; Record MT; Saecker RM
Proc Natl Acad Sci U S A; 2007 May; 104(19):7833-8. PubMed ID: 17470797
[TBL] [Abstract][Full Text] [Related]
19. Effect of A(n) tracts within the UP element proximal subsite of a model promoter on kinetics of open complex formation by Escherichia coli RNA polymerase.
Kolasa IK; Loziński T; Wierzchowski KL
Acta Biochim Pol; 2002; 49(3):659-69. PubMed ID: 12422236
[TBL] [Abstract][Full Text] [Related]
20. Solute probes of conformational changes in open complex (RPo) formation by Escherichia coli RNA polymerase at the lambdaPR promoter: evidence for unmasking of the active site in the isomerization step and for large-scale coupled folding in the subsequent conversion to RPo.
Kontur WS; Saecker RM; Davis CA; Capp MW; Record MT
Biochemistry; 2006 Feb; 45(7):2161-77. PubMed ID: 16475805
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
