BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

376 related articles for article (PubMed ID: 9876122)

  • 1. Molecular dynamics simulations of solvated yeast tRNA(Asp).
    Auffinger P; Louise-May S; Westhof E
    Biophys J; 1999 Jan; 76(1 Pt 1):50-64. PubMed ID: 9876122
    [TBL] [Abstract][Full Text] [Related]  

  • 2. RNA hydration: three nanoseconds of multiple molecular dynamics simulations of the solvated tRNA(Asp) anticodon hairpin.
    Auffinger P; Westhof E
    J Mol Biol; 1997 Jun; 269(3):326-41. PubMed ID: 9199403
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Yeast aspartyl-tRNA synthetase residues interacting with tRNA(Asp) identity bases connectively contribute to tRNA(Asp) binding in the ground and transition-state complex and discriminate against non-cognate tRNAs.
    Eriani G; Gangloff J
    J Mol Biol; 1999 Aug; 291(4):761-73. PubMed ID: 10452887
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Molecular dynamics of the anticodon domain of yeast tRNA(Phe): codon-anticodon interaction.
    Lahiri A; Nilsson L
    Biophys J; 2000 Nov; 79(5):2276-89. PubMed ID: 11053108
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry.
    Wang B; Wilkinson KA; Weeks KM
    Biochemistry; 2008 Mar; 47(11):3454-61. PubMed ID: 18290632
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Major identity determinants for enzymatic formation of ribothymidine and pseudouridine in the T psi-loop of yeast tRNAs.
    Becker HF; Motorin Y; Sissler M; Florentz C; Grosjean H
    J Mol Biol; 1997 Dec; 274(4):505-18. PubMed ID: 9417931
    [TBL] [Abstract][Full Text] [Related]  

  • 7. The free yeast aspartyl-tRNA synthetase differs from the tRNA(Asp)-complexed enzyme by structural changes in the catalytic site, hinge region, and anticodon-binding domain.
    Sauter C; Lorber B; Cavarelli J; Moras D; Giegé R
    J Mol Biol; 2000 Jun; 299(5):1313-24. PubMed ID: 10873455
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Molecular dynamics of the frame-shifting pseudoknot from beet western yellows virus: the role of non-Watson-Crick base-pairing, ordered hydration, cation binding and base mutations on stability and unfolding.
    Csaszar K; Spacková N; Stefl R; Sponer J; Leontis NB
    J Mol Biol; 2001 Nov; 313(5):1073-91. PubMed ID: 11700064
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Molecular modeling of the three-dimensional architecture of the RNA component of yeast RNase MRP.
    Schmitt ME
    J Mol Biol; 1999 Oct; 292(4):827-36. PubMed ID: 10525408
    [TBL] [Abstract][Full Text] [Related]  

  • 10. RNA solvation: a molecular dynamics simulation perspective.
    Auffinger P; Westhof E
    Biopolymers; 2000-2001; 56(4):266-74. PubMed ID: 11754340
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Mg(2+) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.
    Misra VK; Draper DE
    J Mol Biol; 2000 Jun; 299(3):813-25. PubMed ID: 10835286
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Crystal structure of glutamyl-queuosine tRNAAsp synthetase complexed with L-glutamate: structural elements mediating tRNA-independent activation of glutamate and glutamylation of tRNAAsp anticodon.
    Blaise M; Olieric V; Sauter C; Lorber B; Roy B; Karmakar S; Banerjee R; Becker HD; Kern D
    J Mol Biol; 2008 Sep; 381(5):1224-37. PubMed ID: 18602926
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Solution structure of the 3'-end of brome mosaic virus genomic RNAs. Conformational mimicry with canonical tRNAs.
    Felden B; Florentz C; Giegé R; Westhof E
    J Mol Biol; 1994 Jan; 235(2):508-31. PubMed ID: 8289279
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Evaluation of uranyl photocleavage as a probe to monitor ion binding and flexibility in RNAs.
    Wittberger D; Berens C; Hammann C; Westhof E; Schroeder R
    J Mol Biol; 2000 Jul; 300(2):339-52. PubMed ID: 10873469
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Molecular dynamics study of water penetration in staphylococcal nuclease.
    Damjanović A; García-Moreno B; Lattman EE; García AE
    Proteins; 2005 Aug; 60(3):433-49. PubMed ID: 15971206
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms.
    Bahar I; Jernigan RL
    J Mol Biol; 1998 Sep; 281(5):871-84. PubMed ID: 9719641
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A distinctive RNA fold: the solution structure of an analogue of the yeast tRNAPhe T Psi C domain.
    Koshlap KM; Guenther R; Sochacka E; Malkiewicz A; Agris PF
    Biochemistry; 1999 Jul; 38(27):8647-56. PubMed ID: 10393540
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Arginine aminoacylation identity is context-dependent and ensured by alternate recognition sets in the anticodon loop of accepting tRNA transcripts.
    Sissler M; Giegé R; Florentz C
    EMBO J; 1996 Sep; 15(18):5069-76. PubMed ID: 8890180
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Stability of nucleic acid base pairs in organic solvents: molecular dynamics, molecular dynamics/quenching, and correlated ab initio study.
    Zendlová L; Hobza P; Kabelác M
    J Phys Chem B; 2007 Mar; 111(10):2591-609. PubMed ID: 17302446
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Structural specificity of nuclease from wheat chloroplasts stroma.
    Gabryszuk J; Keith G; Mońko M; Kuligowska E; Dirheimer G; Szarkowski JW; Przykorska A
    Nucleic Acids Symp Ser; 1995; (33):115-9. PubMed ID: 8643343
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 19.