943 related articles for article (PubMed ID: 9917407)
1. Visualizing and quantifying molecular goodness-of-fit: small-probe contact dots with explicit hydrogen atoms.
Word JM; Lovell SC; LaBean TH; Taylor HC; Zalis ME; Presley BK; Richardson JS; Richardson DC
J Mol Biol; 1999 Jan; 285(4):1711-33. PubMed ID: 9917407
[TBL] [Abstract][Full Text] [Related]
2. Asparagine and glutamine: using hydrogen atom contacts in the choice of side-chain amide orientation.
Word JM; Lovell SC; Richardson JS; Richardson DC
J Mol Biol; 1999 Jan; 285(4):1735-47. PubMed ID: 9917408
[TBL] [Abstract][Full Text] [Related]
3. Statistical analysis of atomic contacts at RNA-protein interfaces.
Treger M; Westhof E
J Mol Recognit; 2001; 14(4):199-214. PubMed ID: 11500966
[TBL] [Abstract][Full Text] [Related]
4. Protein imperfections: separating intrinsic from extrinsic variation of torsion angles.
Butterfoss GL; Richardson JS; Hermans J
Acta Crystallogr D Biol Crystallogr; 2005 Jan; 61(Pt 1):88-98. PubMed ID: 15608380
[TBL] [Abstract][Full Text] [Related]
5. Structural features of protein-nucleic acid recognition sites.
Nadassy K; Wodak SJ; Janin J
Biochemistry; 1999 Feb; 38(7):1999-2017. PubMed ID: 10026283
[TBL] [Abstract][Full Text] [Related]
6. The penultimate rotamer library.
Lovell SC; Word JM; Richardson JS; Richardson DC
Proteins; 2000 Aug; 40(3):389-408. PubMed ID: 10861930
[TBL] [Abstract][Full Text] [Related]
7. Disallowed Ramachandran conformations of amino acid residues in protein structures.
Gunasekaran K; Ramakrishnan C; Balaram P
J Mol Biol; 1996 Nov; 264(1):191-8. PubMed ID: 8950277
[TBL] [Abstract][Full Text] [Related]
8. On the potential role of the amino nitrogen atom as a hydrogen bond acceptor in macromolecules.
Luisi B; Orozco M; Sponer J; Luque FJ; Shakked Z
J Mol Biol; 1998 Jun; 279(5):1123-36. PubMed ID: 9642089
[TBL] [Abstract][Full Text] [Related]
9. Crystal structure of a glutamate/aspartate binding protein complexed with a glutamate molecule: structural basis of ligand specificity at atomic resolution.
Hu Y; Fan CP; Fu G; Zhu D; Jin Q; Wang DC
J Mol Biol; 2008 Sep; 382(1):99-111. PubMed ID: 18640128
[TBL] [Abstract][Full Text] [Related]
10. Statistically based reduced representation of amino acid side chains.
Rainey JK; Goh MC
J Chem Inf Comput Sci; 2004; 44(3):817-30. PubMed ID: 15154746
[TBL] [Abstract][Full Text] [Related]
11. Statistical and molecular dynamics studies of buried waters in globular proteins.
Park S; Saven JG
Proteins; 2005 Aug; 60(3):450-63. PubMed ID: 15937899
[TBL] [Abstract][Full Text] [Related]
12. Computing van der Waals energies in the context of the rotamer approximation.
Grigoryan G; Ochoa A; Keating AE
Proteins; 2007 Sep; 68(4):863-78. PubMed ID: 17554777
[TBL] [Abstract][Full Text] [Related]
13. Assessing protein structures with a non-local atomic interaction energy.
Melo F; Feytmans E
J Mol Biol; 1998 Apr; 277(5):1141-52. PubMed ID: 9571028
[TBL] [Abstract][Full Text] [Related]
14. A set of van der Waals and coulombic radii of protein atoms for molecular and solvent-accessible surface calculation, packing evaluation, and docking.
Li AJ; Nussinov R
Proteins; 1998 Jul; 32(1):111-27. PubMed ID: 9672047
[TBL] [Abstract][Full Text] [Related]
15. Do water molecules mediate protein-DNA recognition?
Reddy CK; Das A; Jayaram B
J Mol Biol; 2001 Nov; 314(3):619-32. PubMed ID: 11846571
[TBL] [Abstract][Full Text] [Related]
16. Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins.
Schrauber H; Eisenhaber F; Argos P
J Mol Biol; 1993 Mar; 230(2):592-612. PubMed ID: 8464066
[TBL] [Abstract][Full Text] [Related]
17. Structure validation by Calpha geometry: phi,psi and Cbeta deviation.
Lovell SC; Davis IW; Arendall WB; de Bakker PI; Word JM; Prisant MG; Richardson JS; Richardson DC
Proteins; 2003 Feb; 50(3):437-50. PubMed ID: 12557186
[TBL] [Abstract][Full Text] [Related]
18. Crystal structure of lambda-Cro bound to a consensus operator at 3.0 A resolution.
Albright RA; Matthews BW
J Mol Biol; 1998 Jul; 280(1):137-51. PubMed ID: 9653037
[TBL] [Abstract][Full Text] [Related]
19. Structure refinement of the aldehyde oxidoreductase from Desulfovibrio gigas (MOP) at 1.28 A.
Rebelo JM; Dias JM; Huber R; Moura JJ; Romão MJ
J Biol Inorg Chem; 2001 Oct; 6(8):791-800. PubMed ID: 11713686
[TBL] [Abstract][Full Text] [Related]
20. Influence of solvent molecules on the stereochemical code of glycyl residues in proteins.
Eswar N; Nagarajaram HA; Ramakrishnan C; Srinivasan N
Proteins; 2002 Nov; 49(3):326-34. PubMed ID: 12360522
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]